SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73080

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene73080
CGTCGTGACCTTGGCTGTCACTCAGGATTGAAGTAAAGAATAGGATTTATATGTTTGTAGTAGAAGATAGATCACACCCTCAATTCAAAGAGATCTATGCAAAGTTGGAGGAATTGACTGGACAGCTGAAGGAGGCAGGCTATGTGCCCGACACAGGATTTGCACTCCATGATTTGGATCA

Ace file of the UniGene sp_v3.0_unigene73080

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	GSVIVT00008013001; VITISV_037837;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr2:11783927-11786533 REVERSE LENGTH=868	6.0e-13	54%
RefSeq	Arabidopsis thaliana	NP_180329.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	8.0e-13	54%
RefSeq	Populus trichocarpa	XP_002302824.1	predicted protein [Populus trichocarpa]	2.0e-13	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 78 aas, your sequence is shorter than subject: 59 - 246

Fln protein: S*PWLSLRIEVKNRIYMFVVEDRSHPQFKEIYAKLEELTGQLKEAGYVPDTGFALHDLD

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTGAAGTAAAGAATAGGATTTATATGTTTGTAGTAGAAGATAGATCACACCCTCAATTCAAAGAGATCTATGCAAAGTTGGAGGAATTGACTGGACAGCTGAAGGAGGCAGGCTATGTGCCCGACACAGGATTTGCACTCCATGATTTGGATCA

Fln Alignment:

GG46A6U02HMQQE___IEVKNRIYMFVVEDRSHPQFKEIYAKLEELTGQLKEAGYVPDTGFALHDLD
D5AAE0_______________IEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain