SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73066

Length: 197 nt

UniGene Fasta

>sp_v3.0_unigene73066
CGTCGTGACCTTGGCTGTCACTCATATGTGCCTGACATGAAGTATGTATTGCATGACGTTGAGGAGGAGGATAAGGAATACCACCTATATCATCACAGTGAGAAGCTGGCCATTGCTTTTGGGCTTATCAGCACAGTAACAGGGGCACCTATTCAAATTGTGAAGAACATTCGTGTGTGTCATGACTGCCATATTTC

Ace file of the UniGene sp_v3.0_unigene73066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Haplomitrium mnioides RepID=B3U1W4_9MARC	-	-	1.0e-18	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g47580; At2g01510; At2g22070; At2g27610; At2g41080; At4g33170; At4g37380; At5g46460; F10A12.28; F15K20.29; F16N3.14; F2I9.13; F4I10.100; F6G17.30; GSVIVT00002188001; GSVIVT00003060001; GSVIVT00003383001; GSVIVT00004068001; GSVIVT00005426001; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:17485668-17486387 FORWARD LENGTH=239	3.0e-21	60%
RefSeq	Arabidopsis thaliana	NP_175189.2	putative lipoyltransferase [Arabidopsis thaliana]	4.0e-21	60%
RefSeq	Populus trichocarpa	XP_002306730.1	predicted protein [Populus trichocarpa]	7.0e-21	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 65 - 246

Fln protein: RRDLGCHSYVPDMKYVLHDVEEEDKEYHLYHHSEKLAIAFGLISTVTGAPIQIVKNIRVCHDCHI

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTGCCTGACATGAAGTATGTATTGCATGACGTTGAGGAGGAGGATAAGGAATACCACCTATATCATCACAGTGAGAAGCTGGCCATTGCTTTTGGGCTTATCAGCACAGTAACAGGGGCACCTATTCAAATTGTGAAGAACATTCGTGTGTGTCATGACTGCCATATTTC

Fln Alignment:

GG46A6U02HTYWY___RDLGCHSYVPDMKYVLHDVEEEDKEYHLYHHSEKLAIAFGLISTVTGAPIQIVKNIRVCHDCH
D5AAE0_______________RQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain