SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73060

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene73060
CGTCGTGACCTTGGCTGTCACTCATCTGCAAGAGAATTAACAAGGATCAATGGCACTACTAAAGCACCAGTAATGAACAATGCTGCTGAAACAGCATTGGGCGCAGTGACAATCAGAGCATTTAACATGGTAGAAAG

Ace file of the UniGene sp_v3.0_unigene73060

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	multidrug-resistance related protein [Arabidopsis thaliana]	-	-	5.0e-08	78%
FL-Next	Isoform 2 of ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8	-	-	0.0	78%
Sma3	Chromosome chr9 scaffold_7, whole genome shotgun sequence	-	-	6.227e-06	-

Source	Gene names
Sma3	At3g21250; GSVIVT00034195001; GSVIVT00034196001; GSVIVT00034197001; MRP1; MRP6; MRP8; MXL8.11; Os05g0196100; OsI_18778; OsJ_17442; P0617H07.4; POPTRDRAFT_288963; RCOM_0313190;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21250.2	MRP6, ABCC8 multidrug resistance-associated protein 6 chr3:7457668-7463261 REVERSE LENGTH=1464	7.0e-12	78%
RefSeq	Arabidopsis thaliana	NP_188762.3	multidrug resistance-associated protein 6 [Arabidopsis thaliana]	9.0e-12	78%
RefSeq	Populus trichocarpa	XP_002327533.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	9.0e-13	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LGU1-2

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 45 - 1453

Fln protein: RRDLGCHSSARELTRINGTTKAPVMNNAAETALGAVTIRAFNMVE

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGCAAGAGAATTAACAAGGATCAATGGCACTACTAAAGCACCAGTAATGAACAATGCTGCTGAAACAGCATTGGGCGCAGTGACAATCAGAGCATTTAACATGGTAGAAAG

Fln Alignment:

GG46A6U02IJFCJ___SSARELTRINGTTKAPVMNNAAETALGAVTIRAFNMVE
Q8LGU1-2_____________ASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain