SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73044

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene73044
CGTCGTGACCTTGGCTGTCACTCAGATGAACAGGTATGAATCCTTCCGGCGAGCTGGCTTTCAGAAGGCAAACATGAGGAGGGTATTGCAGAGTATAGCGGGGTGTCCCATCTCCATGCCCATGACCATAGTCATGTCGGGAGTAGCCAAGATGTTTGGTGGGGGAATTGGTGGAAACGGGGCGGATGGTGATGACGGAGAGGAACG

Ace file of the UniGene sp_v3.0_unigene73044

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TAFII28 domain containing protein	-	-	6.0e-16	40%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	76%
Sma3	Transcription initiation factor TFIID subunit 11	-	-	8.693e-10	-

Source	Gene names
Sma3	B1144G04.51; GSVIVT00000980001; Os01g0680400; OsI_03273; OsJ_03014; P0019E03.6; PHYPADRAFT_147903; POPTRDRAFT_838144; RCOM_0096320;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TAFII28-like protein	IPR006809	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299376.1	predicted protein [Populus trichocarpa]	5.0e-13	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6SV90

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 68 - 155

Fln protein: VVTLAVTQMNRYESFRRAGFQKANMRRVLQSIAGCPISMPMTIVMSGVAKMFGGGIGGNGADGDDGEE

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGAACAGGTATGAATCCTTCCGGCGAGCTGGCTTTCAGAAGGCAAACATGAGGAGGGTATTGCAGAGTATAGCGGGGTGTCCCATCTCCATGCCCATGACCATAGTCATGTCGGGAGTAGCCAAGATGTTTGGTGGGGGAATTGGTGGAAACGGGGCGGATGGTGATGACGGAGAGGAACG

Fln Alignment:

GG46A6U02IXNQ5___QMNRYESFRRAGFQKANMRRVLQSIAGC-PISMPMTIVMSGVAKMF
C6SV90_______________QMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain