SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73042

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene73042
CGTCGTGACCTTGGCTGTCACTCAGCTTTTGATGTTCTATCTATTTGCTTCAATGTCACATCTTGTGACAGCATTTACTGCAGTAGCTTCAGCATCTTCCCTTGCATTCTGCCTTCCCCCTTATGTTTTTTACATAAATTCTAAGCTTGGGTCAGTCGATCCCATGGTTACTCGATGCTACTGCCGGCCGTTCATTAGGGTGCAGGGAATTGTGGTGTTGGTG

Ace file of the UniGene sp_v3.0_unigene73042

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	signal peptide peptidase-like 1 [Arabidopsis thaliana] gb\|AAL25595.1\| AT4g33410/F17M5_170 [Arabidopsis thaliana] gb\|AAN18053.1\| At4g33410/F17M5_170 [Arabidopsis thaliana] gb\|ACG24260.1\| signal peptide peptidase-like 3 [Zea mays] gb\|AEE86221.1\| signal pept	-	-	7.0e-05	35%
FL-Next	sp=Signal peptide peptidase-like 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	63%

Source	Gene names
Sma3	GSVIVT00037663001; LOC_Os10g25360; OSJNBa0011L09.25; Os10g0393100; OsI_33436; OsJ_31401; POPTRDRAFT_570443; RCOM_1583410; VITISV_018735;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G7C7

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 74 - 371

Fln protein: VVTLAVTQLLMFYLFASMSHLVTAFTAVASASSLAFCLPPYVFYINSKLGSVDPMVTRCYCRPFIRVQGIVVLV

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTGATGTTCTATCTATTTGCTTCAATGTCACATCTTGTGACAGCATTTACTGCAGTAGCTTCAGCATCTTCCCTTGCATTCTGCCTTCCCCCTTATGTTTTTTACATAAATTCTAAGCTTGGGTCAGTCGATCCCATGGTTACTCGATGCTACTGCCGGCCGTTCATTAGGGTGCAGGGAATTGTGGTGTTGGTG

Fln Alignment:

GG46A6U02GEVG3___LLMFYLFASMSHXXXXXXXXXXXXXXXXCLPPYVFYINSKLGSVDPMVTRCYCRPFIRVQGIVVLV
Q7G7C7_______________LLMFYLFSSVSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGVGDPFVSRCCSKPFTRLQGLLVAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain