SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73000

Length: 172 nt

UniGene Fasta

>sp_v3.0_unigene73000
CGTCGTGACCTTGGCTGTCACTCAAAGAGTGTCTTTGGTGAAGATGCACTGGTAAATGTGAGCATTGAGAAGCAATCTGATGGCAAGCTGAGCGGCTTTATCAGAATAAGAAGCAAAACCCAGGGCATTGCTTTGAGCTTGGGTGNTAAAATCACACTCAAACAAAAAGGCT

Ace file of the UniGene sp_v3.0_unigene73000

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group]	-	-	4.0e-17	88%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Coatomer subunit beta	-	-	5.105e-13	-

Source	Gene names
Sma3	At4g31480; At4g31490; BCOP; CHLREDRAFT_195438; COP2; COPB1; COPbeta; F3L17.50; F3L17.60; GSVIVT00025293001; GSVIVT00032317001; LOC_Os01g17430; LOC_Os11g07280; MICPUCDRAFT_32783; MICPUN_104806; OSJNBa0036E02.23; OSJNBa0055G24; OSJNBb0063D09; OSTLU_49385; O

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Coatomer, beta subunit, C-terminal	IPR011710	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Coatomer beta subunit	IPR016460	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31480.1	Coatomer, beta subunit chr4:15264145-15267384 FORWARD LENGTH=948	5.0e-22	88%
RefSeq	Arabidopsis thaliana	NP_001190880.1	coatomer subunit beta-1 [Arabidopsis thaliana]	6.0e-22	88%
RefSeq	Populus trichocarpa	XP_002333771.1	predicted protein, partial [Populus trichocarpa]	4.0e-25	90%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 57 - 948

Fln protein: RRDLGCHSKSVFGEDALVNVSIEKQSDGKLSGFIRIRSKTQGIALSLGDKITLKQKG

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGAGTGTCTTTGGTGAAGATGCACTGGTAAATGTGAGCATTGAGAAGCAATCTGATGGCAAGCTGAGCGGCTTTATCAGAATAAGAAGCAAAACCCAGGGCATTGCTTTGAGCTTGGGTGaTAAAATCACACTCAAACAAAAAGGCT

Fln Alignment:

GG46A6U02JH0Q9___HSKSVFGEDALVNVSIEKQSDGKLSGFIRIRSKTQGIALSLGDKITLKQKG
C0PR52_______________YAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain