SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72931

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene72931
CGTCGTGACCTTGGCTGTCACTCATTTTAGGGCAAACTCTCTGTACAATTGCCGCTGTGTTAGGAGGCAAGAGTTTGGCATCTCGGATATCTGAAAGAATGGTTGCATTGTGCGGTGGAATTCTTTTTGTTGTGTTTGGCATTCAGTCTTTGCTGACGAAAGTGGAGAATGCCTGAAATTCCACTAAATGATTAAGTGCTA

Ace file of the UniGene sp_v3.0_unigene72931

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0016 protein 5 [Arabidopsis thaliana] sp\|Q9SX28.1\|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb\|AAD49978.1\|AC008075_11 Is a member of PF\|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj\|BAC43336.1\| putative tran	-	-	9.0e-13	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Transmembrane protein PFT27	-	-	1.676e-09	-

Source	Gene names
Sma3	At1g25520; At1g68650; At1g68650/F24J5_5; F24J5.11; F2J7.20; GSVIVT00030303001; PHYPADRAFT_136505; POPTRDRAFT_419696; POPTRDRAFT_566658; POPTRDRAFT_810826; RCOM_0353750;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68650.1	Uncharacterized protein family (UPF0016) chr1:25775825-25777683 FORWARD LENGTH=228	4.0e-18	77%
RefSeq	Arabidopsis thaliana	NP_177032.1	UPF0016 protein 5 [Arabidopsis thaliana]	5.0e-18	77%
RefSeq	Populus trichocarpa	XP_002312384.1	predicted membrane protein, partial [Populus trichocarpa]	3.0e-17	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU88

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 58 - 233

Fln protein: S*PWLSLILGQTLCTIAAVLGGKSLASRISERMVALCGGILFVVFGIQSLLTKVENA*

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGGGCAAACTCTCTGTACAATTGCCGCTGTGTTAGGAGGCAAGAGTTTGGCATCTCGGATATCTGAAAGAATGGTTGCATTGTGCGGTGGAATTCTTTTTGTTGTGTTTGGCATTCAGTCTTTGCTGACGAAAGTGGAGAATGCCTGA___AATTCCACTAAATGATTAAGTGCTA

Fln Alignment:

GG46A6U02GTHVD___ILGQTLCTIAAVLGGKSLASRISERMVALCGGILFVVFGIQSLLTKVEN
A9NU88_______________ILGHTLCTAAAVFGGKTLAARISERMVAVSGGILFVIFGIQSLLTKVEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain