SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72923

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene72923
CGTCGTGACCTTGGCTGTCACTCAAAGGTTGCTATTCCTGTCGTTCCTACCATTAGAGTAGTTATTACTTTCACAAAGTTTGAAGAGCTGCCACCATCTGAAGAATTCTCGACACCTCCATCCAGTCCCGCTCATCTGCAAGATTTGATTGCTAAGGAAAGTAAGAACACACAAGAGTCTTCAAACTCGTGGTTTCAGTGGATAAAGGGCTCCAACAGCCGAAATACAGCAGTGCCTGCTAGTCCAGATAAGCTTTCCAAAGAAGTTCAGGATCCATTTGCTATACCAAGTGACTACACATGGACTACAATAGATGCTAAAAAACGGCAGNTGAAAGAAAGAAGTCTAAGACAAG

Ace file of the UniGene sp_v3.0_unigene72923

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3424 domain containing protein	-	-	7.0e-09	25%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	51%

Source	Gene names
Sma3	At1g04780; GSVIVT00006339001; GSVIVT00032887001; OJ1112_G06.34; OSJNBb0095H08.9; Os02g0810100; Os07g0436000; OsI_09382; OsI_25807; OsJ_08814; OsJ_24036; PHYPADRAFT_161854; PHYPADRAFT_196895; POPTRDRAFT_647109; POPTRDRAFT_738251; POPTRDRAFT_844222; RCOM_06

Source	InterPros	Term	Type	e value	Identity
Sma3	Copper amine oxidase	IPR000269	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303822.1	predicted protein [Populus trichocarpa]	1.0e-12	45%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: I1LAI6

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 118 - 649

Fln protein: RRDLGCHSKVAIPVVPTIRVVITFTKFEELPPSEEFSTPPSSPAHLQDLIAKESKNTQESSNSWFQWIKGSNSRNTAVPASPDKLSKEVQDPFAIPSDYTWTTIDAKKRQMKERSLRQ

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGTTGCTATTCCTGTCGTTCCTACCATTAGAGTAGTTATTACTTTCACAAAGTTTGAAGAGCTGCCACCATCTGAAGAATTCTCGACACCTCCATCCAGTCCCGCTCATCTGCAAGATTTGATTGCTAAGGAAAGTAAGAACACACAAGAGTCTTCAAACTCGTGGTTTCAGTGGATAAAGGGCTCCAACAGCCGAAATACAGCAGTGCCTGCTAGTCCAGATAAGCTTTCCAAAGAAGTTCAGGATCCATTTGCTATACCAAGTGACTACACATGGACTACAATAGATGCTAAAAAACGGCAGaTGAAAGAAAGAAGTCTAAGACAAG

Fln Alignment:

GG46A6U02HP4OR___SSNSWFQWIKGSNSRNTAVPASPDKLSKEVQDPFAIPSDYTWTTIDAKKRQMKERS
I1LAI6_______________SASSWFQWIKAPYRSSTSAPGSSSRI-ENIQDPFAIPSDYTWVTAEAKKKKMQEKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain