SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72898

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene72898
CGTCGTGACCTTGGCTGTCACTCATTCTTGAGTGTTTCTAGGGCAATTACTGTGTCAGCTACATTTTCCCTTTTTGATTGTCTATCAGTCCTCTGTGTAGTCTTCATATATATCTTTGTGCCCGAGACAAAGGGCAAAACTCTGGAAGAGATTGCGGCATCTTTTGATGAGGAAGAGGCAAAGAGACTGTCACAAGGCGCCGAGTTGGAGCTT

Ace file of the UniGene sp_v3.0_unigene72898

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyol/monosaccharide transporter n=2 Tax=Vitis vinifera RepID=E3VWW0_VITVI	-	-	8.0e-11	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	GSVIVT00010278001;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20780.1	Major facilitator superfamily protein chr2:8947496-8949170 REVERSE LENGTH=526	2.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_179671.2	putative polyol transporter 4 [Arabidopsis thaliana]	3.0e-12	60%
RefSeq	Populus trichocarpa	XP_002319907.1	predicted protein [Populus trichocarpa]	1.0e-12	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLD6

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 71 - 538

Fln protein: RRDLGCHSFLSVSRAITVSATFSLFDCLSVLCVVFIYIFVPETKGKTLEEIAASFDEEEAKRLSQGAELEL

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTGAGTGTTTCTAGGGCAATTACTGTGTCAGCTACATTTTCCCTTTTTGATTGTCTATCAGTCCTCTGTGTAGTCTTCATATATATCTTTGTGCCCGAGACAAAGGGCAAAACTCTGGAAGAGATTGCGGCATCTTTTGATGAGGAAGAGGCAAAGAGACTGTCACAAGGCGCCGAGTTGGAGCTT

Fln Alignment:

GG46A6U02FZHEL___SFLSVSRAITVSATFSLFDCLSVLCVVFIYIFVPETKGKTLEEIAASF
B8LLD6_______________TFISISNAITVPGTFYLFAGVSALCSIFIYFCVPETKGKTLEEIVESF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain