UniGene Name: sp_v3.0_unigene72882
Length: 148 nt
UniGene Fasta |
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>sp_v3.0_unigene72882
T |
Ace file of the UniGene sp_v3.0_unigene72882 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Unassigned protein | - | - | 0.0 | - |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 84% |
Sma3 | Pentatricopeptide (PPR) repeat-containing protein-like | - | - | 7.471e-08 | - |
Source | Gene names |
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Sma3 | At1g04840; At1g11290; At1g18485; At1g20230; At1g47580; At1g56690; At2g15690; At2g22070; At3g12770; At3g23330; At3g24000; At3g26782; At3g49170; At3g49710; At3g57430; At4g16835; At4g30700; At4g33170; At4g33990; At4g37380; At5g09950; At5g65570; At5g66520; B1 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | ribosome | GO:0005840 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | structural constituent of ribosome | GO:0003735 | Molecular Function | 0.0 | - |
Sma3 | endonuclease activity | GO:0004519 | Molecular Function | 0.0 | - |
Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
Sma3 | acireductone synthase activity | GO:0043874 | Molecular Function | 0.0 | - |
Sma3 | metal ion binding | GO:0046872 | Molecular Function | 0.0 | - |
Sma3 | DNA methylation | GO:0006306 | Biological Process | 0.0 | - |
Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | mRNA modification | GO:0016556 | Biological Process | 0.0 | - |
Sma3 | L-methionine salvage from methylthioadenosine | GO:0019509 | Biological Process | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT4G33990.1 | EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein chr4:16290141-16292612 REVERSE LENGTH=823 | 1.0e-21 | 84% |
RefSeq | Arabidopsis thaliana | NP_567948.1 | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 1.0e-21 | 84% |
RefSeq | Populus trichocarpa | XP_002303271.1 | predicted protein [Populus trichocarpa] | 2.0e-22 | 79% |
Full-Lengther Next Prediction |
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Fln status: C-terminus
Fln database: coniferopsida.fasta
Fln subject: D5AAE0
Fln msg: your sequence is shorter than subject: 45 - 246
Fln protein:
L
Protein Length:
46
Fln nts:
T
Fln Alignment:
GG46A6U02JSQ1U___LRVCGDCHSATKFISKIVAREIIVRDSKRYHHFKDGQCSCGDYW
D5AAE0_______________LRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain