SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72881

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene72881
CGTCGTGACCTTGGCTGTCACTCATGGTTTGGGTGAAAATGTTTCAACAAAAGGAGATGTATATAGTTATGGAATAGTACTGTTAGAGATCTTAACCAGAAAGAAACCAACCAACAACATGTTCGTGGGAGGATTGAATCTTCCCAGATGGATAACCATGAATTTTCCAAATAAAGTGGAAGAAGTCATTGACAATATTTATTGAGGAACGCCAATGATGACACAAATGAACTA

Ace file of the UniGene sp_v3.0_unigene72881

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative receptor protein kinase [Oryza sativa Japonica Group] gb\|AAP53098.1\| Leucine Rich Repeat family protein [Oryza sativa Japonica Group]	-	-	9.0e-11	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	GSVIVT00014285001; GSVIVT00031303001;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002304735.1	predicted protein [Populus trichocarpa]	8.0e-19	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 77 aas, your sequence is shorter than subject: 68 - 247

Fln protein: VVTLAVTHGLGENVSTKGDVYSYGIVLLEILTRKKPTNNMFVGGLNLPRWITMNFPNKVEEVIDNIY*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTGGGTGAAAATGTTTCAACAAAAGGAGATGTATATAGTTATGGAATAGTACTGTTAGAGATCTTAACCAGAAAGAAACCAACCAACAACATGTTCGTGGGAGGATTGAATCTTCCCAGATGGATAACCATGAATTTTCCAAATAAAGTGGAAGAAGTCATTGACAATATTTATTGAGGAACGCCAATGATGACACAAATGAACTA

Fln Alignment:

GG46A6U02F3XCW___HGLGENVSTKGDVYSYGIVLLEILTRKKPTNNMFVGGLNLPRWITMNFPNKVEEVIDN
A9NW30_______________YGLDGHVTTKGDVYSYGIVLLEMLTGKKPTDNMFVEGMDLQKWVGNSFPNQLGEIVDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain