SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72879

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene72879
CGTCGTGACCTTGGCTGTCACTCATTCCCTTTCTTTGGGGATCTGCTTGGCTTCTTTGGAGGATTTGCCTTTGCTCCAACTACCTACTTTTTGCCTTGCATTATATGGTTGGCCATTAAAAAGCCCAAGAGATTTAGCTCGTCGTGGATCATCAATTGGGTATTTATTATCATAGGAGTTCTACTGATGCTTACATCCTCTATTGGTGGCCTCA

Ace file of the UniGene sp_v3.0_unigene72879

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine histidine transporter-like 3 [Arabidopsis thaliana] sp\|O22719.2\|LHTL3_ARATH RecName: Full=Lysine histidine transporter-like 3 gb\|AEE33815.1\| Lysine histidine transporter-like 3 [Arabidopsis thaliana]	-	-	4.0e-13	71%
FL-Next	sp=Lysine histidine transporter-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	Lysine/histidine transporter	-	-	6.089e-23	-

Source	Gene names
Sma3	AATL2; At1g24400; At1g25530; At1g67640; At1g71680; At3g01760; At5g40780; B1358B12.11; F11I4_17; F11P17.1; F12B7.20; F14O23.2; F26A9.9; F28J7.9; F2J7.5; F4P13.31; GSVIVT00020565001; GSVIVT00030301001; GSVIVT00035071001; GSVIVT00035077001; GSVIVT00035078001

Source	GOs	Term	Type	Identity
Sma3	integral to peroxisomal membrane	GO:0005779	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	peroxisome organization	GO:0007031	Biological Process	-
Sma3	amino acid import	GO:0043090	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Peroxin-3	IPR006966	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61270.1	Transmembrane amino acid transporter family protein chr1:22599665-22602140 REVERSE LENGTH=451	9.0e-18	71%
RefSeq	Arabidopsis thaliana	NP_176322.1	Lysine histidine transporter-like 3 [Arabidopsis thaliana]	1.0e-17	71%
RefSeq	Populus trichocarpa	XP_002298599.1	lysine/histidine transporter [Populus trichocarpa]	1.0e-17	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22719

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 71 - 451

Fln protein: RRDLGCHSFPFFGDLLGFFGGFAFAPTTYFLPCIIWLAIKKPKRFSSSWIINWVFIIIGVLLMLTSSIGGL

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCCTTTCTTTGGGGATCTGCTTGGCTTCTTTGGAGGATTTGCCTTTGCTCCAACTACCTACTTTTTGCCTTGCATTATATGGTTGGCCATTAAAAAGCCCAAGAGATTTAGCTCGTCGTGGATCATCAATTGGGTATTTATTATCATAGGAGTTCTACTGATGCTTACATCCTCTATTGGTGGCCTCA

Fln Alignment:

GG46A6U02JVDG8___TTYFLPCIIWLAIKKPKRFSSSWIINWVFIIIGVLLMLTSSIGGL
O22719_______________TTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMIIAPIGGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain