SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72872

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene72872
CGTCGTGACCTTGGCTGTCACTCAATGGTGGAGGATGAACGCGCACGCAATAATGTACGTGACTAGAGGTGAGGGGAGAGTTGAGGTGGTGGGAGACGAAGGGAGGAATGTGTTTAATGGGCGTCTGAGAGAGGGTCAGTTCATCGTCATTCCCCAATTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACGTTCACAACCTCAGACCTTCTTGCGCTCGACTCTGGCAGGA

Ace file of the UniGene sp_v3.0_unigene72872

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Legumin beta chain (Fragment) n=1 Tax=Pseudolarix kaempferi RepID=Q7M201_PSEKA	-	-	2.0e-18	69%
FL-Next	tr=Legumin-like storage protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	86%
Sma3	Legumin	-	-	1.376e-23	-

Source	Gene names
Sma3	FA02; FAGAG1; Leg1; Leg18; Leg2; Leg26; Leg3; Leg31; Leg4; leg4;

Source	GOs	Term	Type	e value	Identity
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	11-S seed storage protein, plant	IPR006044	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03890.1	RmlC-like cupins superfamily protein chr1:989250-990908 FORWARD LENGTH=451	3.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_171885.1	RmlC-like cupin [Arabidopsis thaliana]	4.0e-12	50%
RefSeq	Populus trichocarpa	XP_002329473.1	predicted protein [Populus trichocarpa]	5.0e-14	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40870

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 82 - 509

Fln protein: VVTLAVTQWWRMNAHAIMYVTRGEGRVEVVGDEGRNVFNGRLREGQFIVIPQFYAVIREAGDEGLEWITFTTSDLLALDSGR

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTGGAGGATGAACGCGCACGCAATAATGTACGTGACTAGAGGTGAGGGGAGAGTTGAGGTGGTGGGAGACGAAGGGAGGAATGTGTTTAATGGGCGTCTGAGAGAGGGTCAGTTCATCGTCATTCCCCAATTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACGTTCACAACCTCAGACCTTCTTGCGCTCGACTCTGGCAGGA

Fln Alignment:

GG46A6U02IIJT6___WRMNAHAIMYVTXXXXXXXXXXXXXXNVFNGRLREGQFIVIPQFYAVIREAGDEGLEWITFTTSDL
Q40870_______________WRMNAHGIMYVTRGEGRIEVVGDEGRSVFDGRVREGQFIVIPQFYAVIKQAGDEGFEWITFTTSDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain