SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72842

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene72842
CGTCGTGACCTTGGCTGTCACTCAGTTTGGTGGGGTAAAAATAATCAACAGAGTTGCTCCAGCATTCTTAGTGCCTGTTTTGTTGTCGGTGTTTCTAATTTTCATTGGCATCCTTTCAGCCTCTCATCGCAATCTTTCTTCTGAGATCACTGGCTTAAGATTGAGCAC

Ace file of the UniGene sp_v3.0_unigene72842

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation chloride cotransporter n=2 Tax=Citrus RepID=D2U833_9ROSI	-	-	2.0e-09	62%
FL-Next	sp=Cation-chloride cotransporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	At1g30450; F26G16.3; PHYPADRAFT_175763; PHYPADRAFT_204831; PHYPADRAFT_217277; ccc;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	-
Sma3	cation:chloride symporter activity	GO:0015377	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	chloride transport	GO:0006821	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid permease domain	IPR004841	-	0.0	-
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30450.1	CCC1, ATCCC1, HAP5 cation-chloride co-transporter 1 chr1:10762905-10769061 FORWARD LENGTH=975	2.0e-13	64%
RefSeq	Arabidopsis thaliana	NP_849732.1	cation-chloride co-transporter 1 [Arabidopsis thaliana]	2.0e-13	64%
RefSeq	Populus trichocarpa	XP_002317348.1	cation-chloride cotransporter [Populus trichocarpa]	3.0e-11	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2UVJ5

Fln msg: Distance to subject end: 640 aas, your sequence is shorter than subject: 55 - 975

Fln protein: VVTLAVTQFGGVKIINRVAPAFLVPVLLSVFLIFIGILSASHRNLSSEITGLRLS

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGTGGGGTAAAAATAATCAACAGAGTTGCTCCAGCATTCTTAGTGCCTGTTTTGTTGTCGGTGTTTCTAATTTTCATTGGCATCCTTTCAGCCTCTCATCGCAATCTTTCTTCTGAGATCACTGGCTTAAGATTGAGCAC

Fln Alignment:

GG46A6U02JOQ73___VTLAVTQFGGVKIINRVAPAFLVPVLLSVFLIFIGILSASHRNLSSEITGLRL
Q2UVJ5_______________ILLCFIVFGGVKMINRVAPAFLVPVLLSIFCIFIGIFLAKTDDPDNGITGLRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain