SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72816

Length: 138 nt

UniGene Fasta

>sp_v3.0_unigene72816
CGTCGTGACCTTGGCTGTCACTCATGCTCCTCTCGGCCTTAATCCCCCTCACACTCATCCGCGGGCCACAGAAATCTTGGTGGTCATGGAGGGTACTCTCTCAGTCGGTTTTATTCACCACTGCCAATAAATTAGTTC

Ace file of the UniGene sp_v3.0_unigene72816

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rhicadhesin receptor, putative n=1 Tax=Ricinus communis RepID=B9T180_RICCO	-	-	4.0e-08	78%
FL-Next	sp=Putative germin-like protein 8-1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	78%
Sma3	Germin-like protein	-	-	2.413e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxalate oxidase.	EC:1.2.3.4	-	2.013e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630		2.013e-06	%

Source	Gene names
Sma3	At4g14630; B1099H05.17; B1099H05.23; B1099H05.29; B1099H05.31; B1099H05.32; B1099H05.34; B1099H05.37; B1099H05.39; B1099H05.40; GER3; GER4c; GER4d; GER6; GL12; GL8; GLP16; GLP2; GLP4; GLP9; GSVIVT00006256001; GSVIVT00006258001; GSVIVT00006259001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Cupin 2, conserved barrel	IPR013096	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39100.1	GLP6 germin-like protein 6 chr5:15653204-15653596 REVERSE LENGTH=130	4.0e-12	72%
RefSeq	Arabidopsis thaliana	NP_568562.1	germin-like protein 6 [Arabidopsis thaliana]	5.0e-12	72%
RefSeq	Populus trichocarpa	XP_002319672.1	predicted protein [Populus trichocarpa]	2.0e-12	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6YZB2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 78 aas, your sequence is shorter than subject: 43 - 219

Fln protein: VVTLAVTHAPLGLNPPHTHPRATEILVVMEGTLSVGFIHHCQ*

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCTCCTCTCGGCCTTAATCCCCCTCACACTCATCCGCGGGCCACAGAAATCTTGGTGGTCATGGAGGGTACTCTCTCAGTCGGTTTTATTCACCACTGCCAATAAATTAGTTC

Fln Alignment:

GG46A6U02GZFT6___VTHAPLGLNPPHTHPRATEILVVMEGTLSVGFI
Q6YZB2_______________VDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain