SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72788

Length: 136 nt

UniGene Fasta

>sp_v3.0_unigene72788
CCCCATACTCACGACGACGTGGGGTGGCTTAAGACAGTCGATCAGTACTACGTAGGCTCCAATAACAGTATTCAGGGAGCCTGTGTGAGGAACGTATTAGATAGTTTGGTCTACTCATTGCAAGAAGATCCAAACC

Ace file of the UniGene sp_v3.0_unigene72788

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] dbj\|BAB10420.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AED98165.1\| Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]	-	-	2.0e-15	84%
FL-Next	tr=Lysosomal alpha-mannosidase; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	88%
Sma3	Lysosomal alpha-mannosidase, putative	-	-	5.859e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-mannosidase.	EC:3.2.1.24	-	2.53e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other glycan degradation	00511		2.53e-19	%

Source	Gene names
Sma3	AMA1; AT3G26720; At3g26720; At5g13980; At5g66150; GSVIVT00018036001; GSVIVT00036759001; GSVIVT00037952001; GSVIVT00037953001; LOC_Os10g05069; LOC_Os11g32260; MICPUN_62552; OSJNAa0029P06.4; OSJNBa0029P06.15; Os10g0140200; Os11g0525600; OsI_32713; OsI_36309

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66150.1	Glycosyl hydrolase family 38 protein chr5:26439013-26444434 REVERSE LENGTH=1047	2.0e-20	84%
RefSeq	Arabidopsis thaliana	NP_201416.1	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]	2.0e-20	84%
RefSeq	Populus trichocarpa	XP_002303405.1	predicted protein [Populus trichocarpa]	1.0e-20	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7LB83

Fln msg: Distance to subject end: 923 aas, your sequence is shorter than subject: 45 - 1018

Fln protein: PHTHDDVGWLKTVDQYYVGSNNSIQGACVRNVLDSLVYSLQEDPN

Protein Length: 46

Fln nts: CCCCATACTCACGACGACGTGGGGTGGCTTAAGACAGTCGATCAGTACTACGTAGGCTCCAATAACAGTATTCAGGGAGCCTGTGTGAGGAACGTATTAGATAGTTTGGTCTACTCATTGCAAGAAGATCCAAACC

Fln Alignment:

GG46A6U02F5LGE___PHTHDDVGWLKTVDQYYVGSNNSIQGACVRNVLDSLVYSLQEDPN
G7LB83_______________PHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSIVFSLQKDPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain