SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72774

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene72774
CGTCGTGACCTTGGCTGTCACTCAAGAGATGGAGCTAAGTTATTATTAGGTGGAAATTCATGGGGTGATAAAGGTTTTTACATTGAACCAACAATATTCGCAGATGTTCAGGATGATATGCAAATTGCTAAGGAAGAAATATTTGGTCCTGTTATGTCCATCCTAAAGTTCAAGACTATAGAAGAAGTAATAGAAAGAGGAAA

Ace file of the UniGene sp_v3.0_unigene72774

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase, mitochondrial n=1 Tax=Phytophthora infestans T30-4 RepID=D0MV13_PHYIT	-	-	4.0e-19	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Aldehyde dehydrogenase	-	-	8.127e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	2.86e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		2.86e-17	%
Sma3	Pentose and glucuronate interconversions	00040		2.86e-17	%
Sma3	Ascorbate and aldarate metabolism	00053		2.86e-17	%
Sma3	Fatty acid metabolism	00071		2.86e-17	%
Sma3	Valine, leucine and isoleucine degradation	00280		2.86e-17	%
Sma3	Lysine degradation	00310		2.86e-17	%
Sma3	Arginine and proline metabolism	00330		2.86e-17	%
Sma3	Histidine metabolism	00340		2.86e-17	%
Sma3	Tryptophan metabolism	00380		2.86e-17	%
Sma3	beta-Alanine metabolism	00410		2.86e-17	%
Sma3	Glycerolipid metabolism	00561		2.86e-17	%
Sma3	Pyruvate metabolism	00620		2.86e-17	%
Sma3	Chloroalkane and chloroalkene degradation	00625		2.86e-17	%
Sma3	Propanoate metabolism	00640		2.86e-17	%
Sma3	Limonene and pinene degradation	00903		2.86e-17	%
Sma3	Metabolic pathways	01100		2.86e-17	%
Sma3	Biosynthesis of secondary metabolites	01110		2.86e-17	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	1.764e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		1.764e-10	%
Sma3	Metabolic pathways	01100		1.764e-10	%

Source	Gene names
Sma3	ALD1; ALDH; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; Aldh; Aldh1; Aldh2a; Aldh2b; At1g23800; At3g24503; At3g48000; CHLREDRAFT_135609; F5O8.33; F5O8.35; GSVIVT00016121001; GSVIVT00020768001; GSVIVT00028844001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24503.1	ALDH2C4, ALDH1A, REF1 aldehyde dehydrogenase 2C4 chr3:8919732-8923029 REVERSE LENGTH=501	3.0e-19	64%
RefSeq	Arabidopsis thaliana	NP_566749.1	aldehyde dehydrogenase 2C4 [Arabidopsis thaliana]	4.0e-19	64%
RefSeq	Populus trichocarpa	XP_002324977.1	predicted protein [Populus trichocarpa]	1.0e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV57

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 67 - 248

Fln protein: RRDLGCHSRDGAKLLLGGNSWGDKGFYIEPTIFADVQDDMQIAKEEIFGPVMSILKFKTIEEVIERG

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGATGGAGCTAAGTTATTATTAGGTGGAAATTCATGGGGTGATAAAGGTTTTTACATTGAACCAACAATATTCGCAGATGTTCAGGATGATATGCAAATTGCTAAGGAAGAAATATTTGGTCCTGTTATGTCCATCCTAAAGTTCAAGACTATAGAAGAAGTAATAGAAAGAGGAAA

Fln Alignment:

GG46A6U02HLP2X___RDGAKLLLGGNSWGDKGFYIEPTIFADVQDDMQIAKEEIFGPVMSILKFKTIEEVIERG
A9NV57_______________RDGAKLLLGGNSLNNKGFYIEPTIFSDVEDDMQIAKEEIFGPVMSILKFKTIEEAIERG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain