SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72762

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene72762
CGTCGTGACCTTGGCTGTCACTCATTCCGATTTCTTTTCAGACGATGGAATGCCTAAGACGCCGTTTCCCGACGGTTGGAAGGGCGAAAACGGGCTGTATTCGGTAGGATTCACCAGGCGAGGGTTGCTAGGAGCATCACTAGACGCACGGCGCATTGCTCAAGACATAGGCGGGCTGCTAAGGGCAGGAAGGAAACAGCAGTTTG

Ace file of the UniGene sp_v3.0_unigene72762

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavine-containing monoxygenase n=1 Tax=Populus trichocarpa RepID=B9H9Q8_POPTR	-	-	2.0e-16	81%
FL-Next	sp=Flavin-containing monooxygenase YUCCA3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	Flavine-containing monoxygenase	-	-	2.446e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavin-containing monooxygenase.	EC:1.14.13.8	-	2.39e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		2.39e-15	%
Sma3	Drug metabolism - cytochrome P450	00982		2.39e-15	%

Source	Gene names
Sma3	AT4g13260; AT4g32540; At1g04180; At1g04610; At4g13260; At4g32540; At5g11320; At5g43890; B1340F09.23; Bs3; Bs3-E; F17N18.150; F20D22.5; F2I11_210; FML1; FML2; FML3; FML4; FML5; FML7; FML8; GSVIVT00016745001; GSVIVT00020401001; GSVIVT00024967001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	N,N-dimethylaniline monooxygenase activity	GO:0004499	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	auxin biosynthetic process	GO:0009851	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	CUB	IPR000859	-	-
Sma3	Flavin monooxygenase FMO	IPR000960	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04610.1	YUC3 YUCCA 3 chr1:1279524-1281331 FORWARD LENGTH=437	1.0e-21	66%
RefSeq	Arabidopsis thaliana	NP_171955.1	YUCCA family monooxygenase [Arabidopsis thaliana]	2.0e-21	66%
RefSeq	Populus trichocarpa	XP_002309594.1	flavine-containing monoxygenase [Populus trichocarpa]	3.0e-22	81%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O23024

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 68 - 437

Fln protein: VVTLAVTHSDFFSDDGMPKTPFPDGWKGENGLYSVGFTRRGLLGASLDARRIAQDIGGLLRAGRKQQF

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCGATTTCTTTTCAGACGATGGAATGCCTAAGACGCCGTTTCCCGACGGTTGGAAGGGCGAAAACGGGCTGTATTCGGTAGGATTCACCAGGCGAGGGTTGCTAGGAGCATCACTAGACGCACGGCGCATTGCTCAAGACATAGGCGGGCTGCTAAGGGCAGGAAGGAAACAGCAGTTTG

Fln Alignment:

GG46A6U02G07FL___SDFFSDDGMPKTPFPDGWKGENGLYSVGFTRRGLLGASLDARRIAQDIGGLLRAGRKQQ
O23024_______________NDFFSDDGIPKNPFPNGWKGEAGLYAVGFTRKGLFGASLDAMSVAHDIANRWKEESKQQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain