SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72659

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene72659
AGGCCCAAATTTGTAAGTTTGTTAATTTGGACTGTTCTTTGGAGAGGAAAAATGCCAAGCGGTGGGTTTCGTGTGCTGCATCTTGTGAGACCATTTCTTTCAATCTTACCAGAAGTCCAGACGGCTGAAAGAAAAGTACCCTTTAGGGAGAAGGTTCTTTACACTGTAATCTCCCTTTTCATCTTTCTCGTATGCAGTCAGTTGCCTCTATATGGAATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene72659 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG0201 Preprotein translocase subunit SecY	-	-	2.0e-11	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Sec61 transport protein	-	-	1.035e-08	-

Source	Gene names
Sma3	AT2G34250; At1g29310; At1g78720; At2g34250; CHLREDRAFT_188207; F9K20.24; GSVIVT00005279001; GSVIVT00012226001; GSVIVT00027847001; LOC_Os03g11440; MICPUCDRAFT_34543; MICPUN_95488; OSTLU_27583; Os03g0213100; Os09g0347700; OsI_10508; OsI_30997; OsJ_09896; Os

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SecY protein	IPR002208	-	0.0	-
Sma3	ABC transporter, conserved site	IPR017871	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34250.1	SecY protein transport family protein chr2:14462635-14464572 FORWARD LENGTH=475	3.0e-27	89%
RefSeq	Arabidopsis thaliana	NP_001031476.1	protein transport protein SEC61 subunit alpha [Arabidopsis thaliana]	4.0e-27	89%
RefSeq	Populus trichocarpa	XP_002331716.1	Sec61 transport protein [Populus trichocarpa]	6.0e-27	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 412 aas, your sequence is shorter than subject: 60 - 478

Fln protein: MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIRSE*

Protein Length: 61

Fln nts: AGGCCCAAATTTGTAAGTTTGTTAATTTGGACTGTTCTTTGGAGAGGAAAA_-_ATGCCAAGCGGTGGGTTTCGTGTGCTGCATCTTGTGAGACCATTTCTTTCAATCTTACCAGAAGTCCAGACGGCTGAAAGAAAAGTACCCTTTAGGGAGAAGGTTCTTTACACTGTAATCTCCCTTTTCATCTTTCTCGTATGCAGTCAGTTGCCTCTATATGGAATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U02IZ90F___MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIRS
B8LKZ6_______________MPSGGFRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain