SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72649

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene72649
CGTCGTGACCTTGGCTGTCACTCATTTCACGAGAGATATCATACGTTCTGGAATATGGTTGGCATGCAAATTTGCCAAGATTGGAAGCAAGGAACTACATCGACGTATTTGGACAGGACCCCATTTATTTGACGCCAAATATGAAGACCCAAAAACTTCTAGAACTTGCAAAGTTGGAGTTCAA

Ace file of the UniGene sp_v3.0_unigene72649

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-methyl-3-buten-2-ol synthase n=1 Tax=Pinus sabiniana RepID=F5CJS6_9CONI	-	-	3.0e-22	94%
FL-Next	tr=2-methyl-3-buten-2-ol synthase; Pinus torreyana (Torrey pine).	-	-	0.0	96%
Sma3	(4S)-limonene synthase	-	-	3.187e-08	-

Source	Gene names
Sma3	AG3.18; AG6.5; TPS-Far; TPS-Lim; TPS-Lin; TPS-Myr; TPS-Pin; TPS1; ag10; ag11; ag3; ag6; ag8; ag9; agc11; agc8; agc9;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	pinene synthase activity	GO:0050550	Molecular Function	-
Sma3	(4S)-limonene synthase activity	GO:0050552	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I3QDW3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 315 aas, your sequence is shorter than subject: 60 - 614

Fln protein: S*PWLSLISREISYVLEYGWHANLPRLEARNYIDVFGQDPIYLTPNMKTQKLLELAKLEF

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCACGAGAGATATCATACGTTCTGGAATATGGTTGGCATGCAAATTTGCCAAGATTGGAAGCAAGGAACTACATCGACGTATTTGGACAGGACCCCATTTATTTGACGCCAAATATGAAGACCCAAAAACTTCTAGAACTTGCAAAGTTGGAGTTCAA

Fln Alignment:

GG46A6U02IEZHQ___ISREISYVLEYGWHANLPRLEARNYIDVFGQDPIYLTPNMKTQKLLELAKLEF
I3QDW3_______________LSREISYVLEYGWHINLPRLEARNYIDVFGQDPIYLTPNMKTQKLLELAKLEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain