SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72648

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene72648
TGGAAAATTAGGCACACCACAATGACCCATAAGGGTGTTTGCAGATGTTGCAGGGACCAATTAGTTACAATTGATATTGATCCATCAGAGACCGAAACATTTGCCAAATCTATTGCAGCTTTAGCTCTTCAGNGGGAGGCCGAATCCGACTTCACAACATATCAGGAGTGGTTGGATAATAATGGACCATATGAAGCTATTATTGATGGTGCAAATGTGTGCCTC

Ace file of the UniGene sp_v3.0_unigene72648

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proteinaceous RNase P 1 [Arabidopsis thaliana] sp\|Q66GI4.1\|PP179_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Flags: Precursor gb\|AAU05541.1\| At2g32230 [Arabidopsis thaliana] gb\|AEC08652.1\| proteinaceous RNase	-	-	1.0e-18	50%
FL-Next	sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32230.1	PRORP1 proteinaceous RNase P 1 chr2:13679608-13681756 REVERSE LENGTH=572	6.0e-24	50%
RefSeq	Arabidopsis thaliana	NP_850186.1	proteinaceous RNase P 1 [Arabidopsis thaliana]	8.0e-24	50%
RefSeq	Populus trichocarpa	XP_002305261.1	predicted protein [Populus trichocarpa]	2.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q66GI4

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 75 - 572

Fln protein: WKIRHTTMTHKGVCRCCRDQLVTIDIDPSETETFAKSIAALALQREAESDFTTYQEWLDNNGPYEAIIDGANVCL

Protein Length: 76

Fln nts: TGGAAAATTAGGCACACCACAATGACCCATAAGGGTGTTTGCAGATGTTGCAGGGACCAATTAGTTACAATTGATATTGATCCATCAGAGACCGAAACATTTGCCAAATCTATTGCAGCTTTAGCTCTTCAGaGGGAGGCCGAATCCGACTTCACAACATATCAGGAGTGGTTGGATAATAATGGACCATATGAAGCTATTATTGATGGTGCAAATGTGTGCCTC

Fln Alignment:

GG46A6U02H1HFF___WKIRHTTMTHKGVCRCCRDQLVTIDIDPSETETFAKSIAALALQREAESDFTTYQEWLDNNGPYEAIIDGANVCL
Q66GI4_______________WNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain