SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72646

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene72646
CGTCGTGACCTTGGCTGTCACTCAGTATTTTGGGATTCTGTTCGTGCCCTTGCTCGGAGTTATGATTATGTGATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCA

Ace file of the UniGene sp_v3.0_unigene72646

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucan synthase like 3 n=2 Tax=Selaginella moellendorffii RepID=D8QQF0_SELML	-	-	6.0e-11	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Putative callose synthase 1 catalytic subunit	-	-	9.681e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	1.432e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.432e-16	%

Source	Gene names
Sma3	At1g05570; At2g31960; At5g13000; CALS1; CALS2; CALS3; F22D22.29; F3F20.1; GSL12; GSL3; GSL6; GSVIVT00003730001; GSVIVT00024713001; GSVIVT00034810001; Gsl1; LOC_Os03g03610; MtrDRAFT_AC152184g39v2; OJ1015F07.18; OJ1149_C12.24; OSJNBa0069C14.2; OSJNBb0036B04

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G06490.1	ATGSL07, gsl07, atgsl7, GSL7 glucan synthase-like 7 chr1:1978762-1989295 FORWARD LENGTH=1958	3.0e-14	69%
RefSeq	Arabidopsis thaliana	NP_172136.2	callose synthase 7 [Arabidopsis thaliana]	4.0e-14	69%
RefSeq	Populus trichocarpa	XP_002330894.1	predicted protein [Populus trichocarpa]	8.0e-15	79%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA54

Fln msg: Distance to subject end: 32 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 45 - 91

Fln protein: RRDLGCHSVFWDSVRALARSYDYVMGLLLFTPVAILAWFPFVSEF

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTTGGGATTCTGTTCGTGCCCTTGCTCGGAGTTATGATTATGTGATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCA

Fln Alignment:

GG46A6U02FW7H4___RDLGCHSVFWDSVRALARSYDYVMGLLLFTPVAILAWFPFVSEF
D5AA54_______________RPLVHHTGFWGSIRALARGYEFIMGLLLFAPVAVLAWFPFVSEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain