SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72591

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene72591
CGTCGTGACCTTGGCTGTCACTCATGGTTTTACTCTCAGGAGCACACTCAATTGGCGTCTCTCACTGCACATCATTCGTGACCAGGCTCTACAACTTCAGCACGACTATTCCGACCGACCCGTCTCTTGATCCTAAATATGCTGCCTTCCTCAAGGAGAAGTGTCCTCAGGGCTCCAGCAACAACATTACAACCGTGTTCATGGATATTT

Ace file of the UniGene sp_v3.0_unigene72591

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cationic peroxidase 1, putative n=1 Tax=Ricinus communis RepID=B9SWU3_RICCO	-	-	5.0e-16	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	8.648e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	8.648e-16	%
Sma3	Methane metabolism	00680	8.648e-16	%
Sma3	Phenylpropanoid biosynthesis	00940	8.648e-16	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.648e-16	%
Sma3	Metabolic pathways	01100	8.648e-16	%
Sma3	Biosynthesis of secondary metabolites	01110	8.648e-16	%

Source	Gene names
Sma3	At1g05260; At3g21770; GSVIVT00022533001; GSVIVT00022535001; GSVIVT00022537001; GSVIVT00037159001; MSD21.10; MSD21.8; OSJNBa0034O12.19; OSJNBb0099P06.2; Os05g0162000; OsI_18569; OsJ_17220; P3; P30; PER3; PER30; PHYPADRAFT_186076; POPTRDRAFT_569675; POPTRDR

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21770.1	Peroxidase superfamily protein chr3:7673345-7674661 FORWARD LENGTH=329	2.0e-17	60%
RefSeq	Arabidopsis thaliana	NP_188814.1	peroxidase 30 [Arabidopsis thaliana]	3.0e-17	60%
RefSeq	Populus trichocarpa	XP_002321949.1	predicted protein [Populus trichocarpa]	2.0e-18	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 78 aas, your sequence is shorter than subject: 69 - 324

Fln protein: S*PWLSLMVLLSGAHSIGVSHCTSFVTRLYNFSTTIPTDPSLDPKYAAFLKEKCPQGSSNNITTVFMDI

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTTACTCTCAGGAGCACACTCAATTGGCGTCTCTCACTGCACATCATTCGTGACCAGGCTCTACAACTTCAGCACGACTATTCCGACCGACCCGTCTCTTGATCCTAAATATGCTGCCTTCCTCAAGGAGAAGTGTCCTCAGGGCTCCAGCAACAACATTACAACCGTGTTCATGGATATTT

Fln Alignment:

GG46A6U02G2A0T___MVLLSGAHSIGVSHCTSFVTRLYNFSTTIPTDPSLDPKYAAFLKEKCPQGSSNNITTVFMD
A9P1P4_______________LVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKCKPG--DNKTIVEMD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain