SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72562

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene72562
CGTCGTGACCTTGGCTGTCACTCATCTATAATTACGGGGCTTTTTGGAATTAATCTTGATGGTATGCCCGGTGGACAAAATACGCCATATGCATTTGGTGTGTTTACTGCAATATTAATCATTTTAGGCGTGACTCTGATTGGTGGCGGAGTCCTCTATTTTGGGTTGAAACAGCCTATCACTGAAGAACAACTGGCAGTGCGTAAAATGGAGTTGCAAGGTATTGTAAAAC

Ace file of the UniGene sp_v3.0_unigene72562

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F1N18.14 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FXF7_ARATH	-	-	7.0e-15	57%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	72%

Source	Gene names
Sma3	F1N18.14; GSVIVT00003397001; Os01g0601000; Os01g0664100; OsI_02718; OsI_03162; OsJ_02494; OsJ_02916; P0003E08.7; P0518F01.18; POPTRDRAFT_811946; RCOM_0634270;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G29820.1	Magnesium transporter CorA-like family protein chr1:10438219-10440625 FORWARD LENGTH=540	8.0e-20	65%
RefSeq	Arabidopsis thaliana	NP_001117384.1	Magnesium transporter CorA-like family protein [Arabidopsis thaliana]	1.0e-19	65%
RefSeq	Populus trichocarpa	XP_002331866.1	predicted protein [Populus trichocarpa]	1.0e-18	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S172

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 77 - 570

Fln protein: RRDLGCHSSIITGLFGINLDGMPGGQNTPYAFGVFTAILIILGVTLIGGGVLYFGLKQPITEEQLAVRKMELQGIVK

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTATAATTACGGGGCTTTTTGGAATTAATCTTGATGGTATGCCCGGTGGACAAAATACGCCATATGCATTTGGTGTGTTTACTGCAATATTAATCATTTTAGGCGTGACTCTGATTGGTGGCGGAGTCCTCTATTTTGGGTTGAAACAGCCTATCACTGAAGAACAACTGGCAGTGCGTAAAATGGAGTTGCAAGGTATTGTAAAAC

Fln Alignment:

GG46A6U02JOG8Z___SIITGLFGINLDGMPGGQNTPYAFGVFTAXXXXXXXXXXXXXXXYFGLKQPITEEQLAVRKMELQGIVK
B9S172_______________SIITGLFGINVDGIPGAENTPYAFGVFTAILLFIGVVLIAVGLLYLGLKQPITEKRVEVRKLELQELVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain