SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72512

Length: 271 nt

UniGene Fasta

>sp_v3.0_unigene72512
CGTCGTGACCTTGGCTGTCACTCACTCGAGAAGAAATAAAGCTATGAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTTAAACCTCCTAGTGATGAACCGCTTATGGCACTGTGGATGATAAAGTCATCGACTTTAGNGATGTGGATA

Ace file of the UniGene sp_v3.0_unigene72512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cellulose synthase-like protein D2 [Arabidopsis thaliana] sp\|Q9LFL0.1\|CSLD2_ARATH RecName: Full=Cellulose synthase-like protein D2; Short=AtCslD2 emb\|CAC01704.1\| cellulose synthase catalytic subunit-like protein [Arabidopsis thaliana] gb\|AED92357.1\| cellu	-	-	4.0e-22	68%
FL-Next	sp=Cellulose synthase-like protein D3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Cellulose synthase-like protein D4	-	-	2.16e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	4.367e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		4.367e-18	%
Sma3	N-Glycan biosynthesis	00510		4.367e-18	%
Sma3	Mucin type O-Glycan biosynthesis	00512		4.367e-18	%
Sma3	Various types of N-glycan biosynthesis	00513		4.367e-18	%
Sma3	Other types of O-glycan biosynthesis	00514		4.367e-18	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		4.367e-18	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		4.367e-18	%
Sma3	Lipopolysaccharide biosynthesis	00540		4.367e-18	%
Sma3	Peptidoglycan biosynthesis	00550		4.367e-18	%
Sma3	Glycerolipid metabolism	00561		4.367e-18	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		4.367e-18	%
Sma3	Sphingolipid metabolism	00600		4.367e-18	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		4.367e-18	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		4.367e-18	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		4.367e-18	%
Sma3	Carotenoid biosynthesis	00906		4.367e-18	%
Sma3	Zeatin biosynthesis	00908		4.367e-18	%
Sma3	Flavonoid biosynthesis	00941		4.367e-18	%
Sma3	Anthocyanin biosynthesis	00942		4.367e-18	%
Sma3	Flavone and flavonol biosynthesis	00944		4.367e-18	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		4.367e-18	%
Sma3	Betalain biosynthesis	00965		4.367e-18	%
Sma3	Biosynthesis of type II polyketide products	01057		4.367e-18	%
Sma3	Metabolic pathways	01100		4.367e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		4.367e-18	%
Sma3	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	3.191e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		3.191e-10	%

Source	Gene names
Sma3	At1g32180; At3g03050; At4g38190; At5g16910; CSLD1; CSLD2; CSLD3; CSLD4; CSLD6; CslD1; F20D10.310; F2K13.60; F3C3.4; GSVIVT00014029001; GSVIVT00015671001; GSVIVT00028062001; KJK; LOC_Os08g25710; LOC_Os12g36890; Os08g0345500; Os12g0555600; OsI_027835; OsI_2

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cellulose synthase	IPR005150	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16910.1	ATCSLD2, CSLD2 cellulose-synthase like D2 chr5:5561679-5565290 FORWARD LENGTH=1145	2.0e-27	68%
RefSeq	Arabidopsis thaliana	NP_197193.1	cellulose synthase-like protein D2 [Arabidopsis thaliana]	2.0e-27	68%
RefSeq	Populus trichocarpa	XP_002325817.1	cellulose synthase-like protein [Populus trichocarpa]	5.0e-27	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M9M4

Fln msg: Distance to subject end: 556 aas, your sequence is shorter than subject: 90 - 1145

Fln protein: VVTLAVTHSRRNKAMKVERQNEAELKETIKVPKATWMADGTHWPGTWTVASKEHSRGDHAGIIQVMLKPPSDEPLMALWMIKSSTLEMWI

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCGAGAAGAAATAAAGCTATGAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTTAAACCTCCTAGTGATGAACCGCTTATGGCACTGTGGATGATAAAGTCATCGACTTTAGaGATGTGGATA

Fln Alignment:

GG46A6U02HCAGY___HSRRN-KAMKVERQN-EAELKETIKVPKATWMADGTHWPGTWTVASKEHSRGDHAGIIQVMLKPPSDEPL
Q9M9M4_______________HAREEIKAMKLQRQNRDEEIVEPVKIPKATWMADGTHWPGTWINSGPDHSRSDHAGIIQVMLKPPSDEPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain