SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72478

Length: 119 nt

UniGene Fasta

>sp_v3.0_unigene72478
CGTCGTGACCTTGGCTGTCACTCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAA

Ace file of the UniGene sp_v3.0_unigene72478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Propionyl-CoA carboxylase beta chain n=6 Tax=Poaceae RepID=B6SWZ4_MAIZE	-	-	2.0e-10	93%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%

Source	ECs	Term	Type	e value	Identity
Sma3	Propionyl-CoA carboxylase.	EC:6.4.1.3	-	4.061e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Valine, leucine and isoleucine degradation	00280	4.061e-09	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	4.061e-09	%
Sma3	Propanoate metabolism	00640	4.061e-09	%
Sma3	Carbon fixation pathways in prokaryotes	00720	4.061e-09	%
Sma3	Metabolic pathways	01100	4.061e-09	%

Source	Gene names
Sma3	At4g34030; F17I5.220; F28A23.210; GSVIVT00036606001; MCCB; OSJNBa0056L09.27; Os08g0424200; OsI_29286; OsJ_27365; PCB1; PHYPADRAFT_208593; POPTRDRAFT_557395; RCOM_0813260; THAPSDRAFT_269328; VITISV_001775;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	leucine catabolic process	GO:0006552	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34030.1	MCCB 3-methylcrotonyl-CoA carboxylase chr4:16301298-16303949 FORWARD LENGTH=587	6.0e-13	84%
RefSeq	Arabidopsis thaliana	NP_567950.1	methylcrotonoyl-CoA carboxylase beta chain [Arabidopsis thaliana]	7.0e-13	84%
RefSeq	Populus trichocarpa	XP_002313120.1	predicted protein [Populus trichocarpa]	1.0e-13	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 39 - 587

Fln protein: RRDLGCHSVSCAKVPKITIIVGGSFGAGNYGMCGRAYNP

Protein Length: 40

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAA

Fln Alignment:

GG46A6U02HWDFO___SVSCAKVPKITIIVGGSFGAGNYGMCGRAYNP
Q9LDD8_______________AVSCAKVPKITIITGASFGAGNYAMCGRAYSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain