SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72458

Length: 311 nt

UniGene Fasta

>sp_v3.0_unigene72458
CGTCGTGACCTTGGCTGTCACTCATAATGGAAGGGAAACTCTCCGTTGGTTTCGTAGATTCAGATACCAGCAAACTCTTCTCTGAAATTCTAGAAGCTGGCGATGTGTTTGTGTTCCCCAAGGGGACACTGCACTTCGCTGAGAACATCGGAGAGAAGCCCGCAATTACGATCAACGCGCTCAACAGTCAAAATCCGGGTATTCTTAACATCCCGTCGGCCACTTTCGCTTCCAGTCCCGCCGTTCCCCAGGAAGTGTTGGCCAAGTCTTTCGCCATCAGTTCACAGGAGGTGGAGCAGATCAGAAAGCTC

Ace file of the UniGene sp_v3.0_unigene72458

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Germin-like protein n=5 Tax=Pinaceae RepID=O65010_PINRA	-	-	4.0e-23	57%
FL-Next	tr=Germin-like protein; Pinus caribaea.	-	-	0.0	58%
Sma3	Germin-like protein	-	-	1.815e-07	-

Source	Gene names
Sma3	GER1; GLP1; PRGer1; PcGER1;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: O49135

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 103 - 220

Fln protein: S*PWLSLIMEGKLSVGFVDSDTSKLFSEILEAGDVFVFPKGTLHFAENIGEKPAITINALNSQNPGILNIPSATFASSPAVPQEVLAKSFAISSQEVEQIRKL

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAATGGAAGGGAAACTCTCCGTTGGTTTCGTAGATTCAGATACCAGCAAACTCTTCTCTGAAATTCTAGAAGCTGGCGATGTGTTTGTGTTCCCCAAGGGGACACTGCACTTCGCTGAGAACATCGGAGAGAAGCCCGCAATTACGATCAACGCGCTCAACAGTCAAAATCCGGGTATTCTTAACATCCCGTCGGCCACTTTCGCTTCCAGTCCCGCCGTTCCCCAGGAAGTGTTGGCCAAGTCTTTCGCCATCAGTTCACAGGAGGTGGAGCAGATCAGAAAGCTC

Fln Alignment:

GG46A6U02GK3PR___IMEGKLSVGFVDSDTSKLFSEILEAGDVFVFPKGTLHFAENIGEKPAITINALNSQNPGILNIPSATFASSPAVPQEVLAKSFAISSQEVEQIRK
O49135_______________VVRGALNVGFVDT-SNRLFSHKLVAGDVFIFPKGTVHYLQNTGKITAFTVSAFNSQNPGTVIVSMATFASTPAIPYEVLSKAFAISVQEVSQIRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain