SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72411

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene72411
CGTCGTGACCTTGGCTGTCACTCAAAGTTATGTGACGAAATTAGCATAGACACAGTTGCAACTACTTTAGCACTTGCAGAGCAGCATCAGTGTTTCCAGCTTAAATCAGTTTGTCTCAAATTCATTGCATGTCCTGGGCGACTGAAAGCTGTCATGCAATCTGAGGGATTCGATTATTGAACGAAGTTGCTCCTCTGTTCTATCTGAGC

Ace file of the UniGene sp_v3.0_unigene72411

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp\|Q9M8J9.1\|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb\|AAF30312.1\|AC018907_12 unknown protein [Ara	-	-	8.0e-17	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Speckle-type POZ protein, putative	-	-	6.527e-12	-

Source	Gene names
Sma3	At3g06190; At5g19000; B1026C12.20; F28L1.13; GSVIVT00018417001; GSVIVT00019885001; GSVIVT00023662001; Os07g0101400; Os07g0655300; OsI_24569; OsI_27153; OsJ_22770; OsJ_25406; P0018C07.116; PHYPADRAFT_143618; PHYPADRAFT_217835; PHYPADRAFT_226178; POPTRDRAFT

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	identical protein binding	GO:0042802	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	TRAF-type	IPR013322	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06190.1	ATBPM2, BPM2 BTB-POZ and MATH domain 2 chr3:1874577-1876575 REVERSE LENGTH=406	2.0e-22	75%
RefSeq	Arabidopsis thaliana	NP_566275.1	BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana]	2.0e-22	75%
RefSeq	Populus trichocarpa	XP_002311823.1	predicted protein [Populus trichocarpa]	1.0e-22	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUQ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 60 - 411

Fln protein: RRDLGCHSKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDY*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTATGTGACGAAATTAGCATAGACACAGTTGCAACTACTTTAGCACTTGCAGAGCAGCATCAGTGTTTCCAGCTTAAATCAGTTTGTCTCAAATTCATTGCATGTCCTGGGCGACTGAAAGCTGTCATGCAATCTGAGGGATTCGATTATTGAACGAAGTTGCTCCTCTGTTCTATCTGAGC

Fln Alignment:

GG46A6U02IX27V___RRDLGCHSKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDY
A9NUQ7_______________RLRLLCESKLCRSISVNTVASTLALAESHHATDLKATCLKFAA--ENLAGVMRSKGFEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain