SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72406

Length: 306 nt

UniGene Fasta

>sp_v3.0_unigene72406
GCGTCGTGACCTTGGCTGTCACTCATTGTTTCGGTTCATCGCATCATTGGGTCGGACCATGATCGTAGCCAACACATTTGGTTCATTTGCATTGGTCATTATTTTGCTCCTCGGTGGATTTCTTCTCTCACGACATGACATTAAAGGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCACAAAATGCCATTTCTGTGAACGAGTTTTTGGGTCACCAGTGGAAAAAGCCAACCTTGAGAAATGATGGTTCCTTATTGAGCAATGACACCTTAGGTGTATATGTTACTAAACTCGC

Ace file of the UniGene sp_v3.0_unigene72406

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SMW0_RICCO	-	-	1.0e-23	61%
FL-Next	sp=Putative pleiotropic drug resistance protein 7; Oryza sativa subsp. japonica (Rice).	-	-	0.0	66%
Sma3	ATP-binding cassette transporter, putative	-	-	4.173e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.725e-27	-
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	7.254e-06	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	9.324e-06	-

Source	Gene names
Sma3	ABC1; At1g15520; At2g26910; At2g29940; B1045F02.15; B1090H08.39; F12C20.5; F23F1.14; GSVIVT00016813001; GSVIVT00021655001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00024108001; GSVIVT00032522001; GSVIVT00032575001; GSVIVT00032579001; GSVIVT00032581001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26910.1	PDR4, ATPDR4 pleiotropic drug resistance 4 chr2:11481623-11487874 FORWARD LENGTH=1420	2.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_180259.1	ABC transporter G family member 32 [Arabidopsis thaliana]	3.0e-26	60%
RefSeq	Populus trichocarpa	XP_002304714.1	predicted protein [Populus trichocarpa]	1.0e-29	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GU88

Fln msg: Distance to subject end: 701 aas, your sequence is shorter than subject: 101 - 1444

Fln protein: RRDLGCHSLFRFIASLGRTMIVANTFGSFALVIILLLGGFLLSRHDIKGWWIWGYWISPLMYAQNAISVNEFLGHQWKKPTLRNDGSLLSNDTLGVYVTKL

Protein Length: 102

Fln nts: GCGTCGTGACCTTGGCTGTCACTCATTGTTTCGGTTCATCGCATCATTGGGTCGGACCATGATCGTAGCCAACACATTTGGTTCATTTGCATTGGTCATTATTTTGCTCCTCGGTGGATTTCTTCTCTCACGACATGACATTAAAGGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCACAAAATGCCATTTCTGTGAACGAGTTTTTGGGTCACCAGTGGAAAAAGCCAACCTTGAGAAATGATGGTTCCTTATTGAGCAATGACACCTTAGGTGTATATGTTACTAAACTCGC

Fln Alignment:

GG46A6U02F427P___LFRFIASLGRTMIVANTFGSFAXXXXXXXXXXXXSRHDIKGWWIWGYWISPLMYAQNAISVNEFLGHQWKKPTLRNDGSLLSNDTLGVYVTKL
Q8GU88_______________LFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVV----DPTQSNDTLGVQVLKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain