SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72387

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene72387
CGTCGTGACCTTGGCTGTCACTCAGGATTTTATGGAGTATGCTGAACTTGTTGCACATAAACTGAGACCATTTGAGAGCTTTCATTATGTCACTCTGTTGAAAGCTGTGATGCGGCATGCCATGACGTCGCTGAAAGCTGCAGATGCTAAAGATGTAGCATCATCAGTGACAGTCATTGCCAAT

Ace file of the UniGene sp_v3.0_unigene72387

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S0Q8_RICCO	-	-	1.0e-15	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa	-	-	1.607e-09	-

Source	Gene names
Sma3	At5g37475; GSVIVT00022833001; Os02g0122300; OsI_05645; OsJ_05177; P0575F10.1; PHYPADRAFT_128429; PHYPADRAFT_193642; PHYPADRAFT_57006; POPTRDRAFT_645149; POPTRDRAFT_714222; RCOM_1220860; bip121;

Source	GOs	Term	Type	e value	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor eIF3 subunit	IPR013906	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66070.1	Translation initiation factor eIF3 subunit chr1:24596194-24597520 REVERSE LENGTH=226	2.0e-18	59%
RefSeq	Arabidopsis thaliana	NP_001185326.1	Translation initiation factor eIF3 subunit [Arabidopsis thaliana]	3.0e-18	59%
RefSeq	Populus trichocarpa	XP_002305897.1	predicted protein [Populus trichocarpa]	4.0e-19	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKA3

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 61 - 223

Fln protein: VVTLAVTQDFMEYAELVAHKLRPFESFHYVTLLKAVMRHAMTSLKAADAKDVASSVTVIAN

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTTATGGAGTATGCTGAACTTGTTGCACATAAACTGAGACCATTTGAGAGCTTTCATTATGTCACTCTGTTGAAAGCTGTGATGCGGCATGCCATGACGTCGCTGAAAGCTGCAGATGCTAAAGATGTAGCATCATCAGTGACAGTCATTGCCAAT

Fln Alignment:

GG46A6U02JHMRW___QDFMEYAELVAHKLRPFE-SFHYVTLLKAVMRHAMTSLKAADAKDVASSVTVIAN
B8LKA3_______________EDFIEYAELVSHKLRPFEKSFHYVTLLRTVMRHAMTSLKAADAKEVASSVTVIAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain