SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72382

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene72382
CGTCGTGACCTTGGCTGTCACTCAGGGTACCTATAGTGAATGGGATGAAGAAAAGAAGTTGGAATTTCTTGTCATTGTGCTCAAAGGCAAGCGGCCCCTTGTTCCCCCAACTATTGAGCTTTTCGTGGAAATTAGACAAGGAGTGTTTAGATTGGATTGAAGGAGATTAACATGAAGTAAGGAGTTACGAGCAAAGCTGATATGAAAAC

Ace file of the UniGene sp_v3.0_unigene72382

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATPPC4 n=2 Tax=Brassicaceae RepID=D7KQT7_ARALL	-	-	2.0e-08	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	PPC4; RCOM_0704240;

Source	GOs	Term	Type	e value	Identity
Sma3	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	0.0	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001449	-	0.0	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68750.1	ATPPC4, PPC4 phosphoenolpyruvate carboxylase 4 chr1:25822942-25828104 REVERSE LENGTH=1032	6.0e-11	57%
RefSeq	Arabidopsis thaliana	NP_177043.2	phosphoenolpyruvate carboxylase 4 [Arabidopsis thaliana]	8.0e-11	57%
RefSeq	Populus trichocarpa	XP_002314893.1	predicted protein [Populus trichocarpa]	3.0e-13	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 418 aas, your sequence is shorter than subject: 53 - 1073

Fln protein: VVTLAVTQGTYSEWDEEKKLEFLVIVLKGKRPLVPPTIELFVEIRQGVFRLD*

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTACCTATAGTGAATGGGATGAAGAAAAGAAGTTGGAATTTCTTGTCATTGTGCTCAAAGGCAAGCGGCCCCTTGTTCCCCCAACTATTGAGCTTTTCGTGGAAATTAGACAAGGAGTGTTTAGATTGGATTGAAGGAGATTAACATGAAGTAAGGAGTTACGAGCAAAGCTGATATGAAAAC

Fln Alignment:

GG46A6U02I77Y9___VTLAVTQGTYSEWDEEKKLEFLVIVLKGKRPLVPPTIELFVEIRQ
C0PQ37_______________ITEYLDMGTYSEWDEEKKLEFLVTELKGKRPLVPPTIEVSAEVRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain