SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72321

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene72321
CGTCGTGACCTTGGCTGTCACTCATTGATGATAGAGAGGAGTGTAGAGAAGCACTACAAAAAGTTGATGCCCTTCATGCCGCTGGTATTGATACAAGTGAATTTCCTTGGCGGGTGCCTGAAAGCCATTGAGTTGAAGTACAAGTACACTGCACATGGACTATGTTACAAGAATGTA

Ace file of the UniGene sp_v3.0_unigene72321

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana]	-	-	1.0e-07	89%
FL-Next	tr=Putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase; Raphanus sativus (Radish).	-	-	0.0	88%

Source	Gene names
Sma3	At1g63680; F24D7.13; GSVIVT00000431001; LOC_Os10g40130; OSJNBa0082M15.18; Os10g0548900; OsJ_32369; PHYPADRAFT_106835; POPTRDRAFT_751316; RCOM_1687000;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	chloroplast fission	GO:0010020	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Mur ligase, N-terminal	IPR000713	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase	IPR005761	-	-
Sma3	Mur ligase, central	IPR013221	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63680.1	" ATMURE, PDE316, MURE acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases chr1:23614461-23617247 FORWARD LENGTH=772"	1.0e-14	88%
RefSeq	Arabidopsis thaliana	NP_176555.4	Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana]	1.0e-14	88%
RefSeq	Populus trichocarpa	XP_002299528.1	predicted protein [Populus trichocarpa]	1.0e-14	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D0R6K4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 43 - 137

Fln protein: S*PWLSLIDDREECREALQKVDALHAAGIDTSEFPWRVPESH*

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATGATAGAGAGGAGTGTAGAGAAGCACTACAAAAAGTTGATGCCCTTCATGCCGCTGGTATTGATACAAGTGAATTTCCTTGGCGGGTGCCTGAAAGCCATTGA___GTTGAAGTACAAGTACACTGCACATGGACTATGTTACAAGAATGTA

Fln Alignment:

GG46A6U02IV6HL___DDREECREALQKVDALHAAGIDTSEFPWRVPESH
D0R6K4_______________DDREECREALQYVDELHQAGIDTSEFPWRLPESH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain