SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72296

Length: 281 nt

UniGene Fasta

>sp_v3.0_unigene72296
CGTCGTGACCTTGGCTGTCACTCATTTTCTCAAAGATGCAGGACTGTATCGTAAAGGGGGATTTTCTGGTGGAGTGTCAAAAGGAGCACTGAAAGAGAGATTCAAGAGATTCAATGCTGCATTTGAAGATATTTACAGGACTCAAAAAATTTGGACAGTGCCTGATTGGCAGCTTCGAGAAGAGCTGCGGATTTCCATTACAGAAAAACTGGTGCCTGCATACCGTTCCTTTGTGGGAAGATATAGGAGTCACTTGGATAGTGAAAGGCATGCAGAGAAGT

Ace file of the UniGene sp_v3.0_unigene72296

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exocyst subunit exo70-D1 [Arabidopsis thaliana] gb\|AAG52591.1\|AC016529_22 unknown protein; 29470-27569 [Arabidopsis thaliana] gb\|AEE35328.1\| exocyst subunit exo70-D1 [Arabidopsis thaliana]	-	-	2.0e-25	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Putative leucine zipper-containing protein	-	-	2.492e-15	-

Source	Gene names
Sma3	At1g54090; At1g72470; At3g14090; At5g13150; At5g50380; B1144B06.20; B1793G04.19; F15I1.17; GSVIVT00017936001; GSVIVT00034051001; LOC_Os12g06840; OJ1003_F04.39-1; OJ1344_B01.18; OJ1485_B09.6; OJ1770_H02.33; OJ1789_C07.12; OSJNBa0072D21.9; Os01g0763700; Os0

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72470.1	ATEXO70D1, EXO70D1 exocyst subunit exo70 family protein D1 chr1:27283759-27285660 FORWARD LENGTH=633	8.0e-32	63%
RefSeq	Arabidopsis thaliana	NP_177391.1	exocyst subunit exo70-D1 [Arabidopsis thaliana]	1.0e-31	63%
RefSeq	Populus trichocarpa	XP_002303234.1	predicted protein [Populus trichocarpa]	2.0e-33	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQZ8

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 93 - 346

Fln protein: VVTLAVTHFLKDAGLYRKGGFSGGVSKGALKERFKRFNAAFEDIYRTQKIWTVPDWQLREELRISITEKLVPAYRSFVGRYRSHLDSERHAEK

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTCAAAGATGCAGGACTGTATCGTAAAGGGGGATTTTCTGGTGGAGTGTCAAAAGGAGCACTGAAAGAGAGATTCAAGAGATTCAATGCTGCATTTGAAGATATTTACAGGACTCAAAAAATTTGGACAGTGCCTGATTGGCAGCTTCGAGAAGAGCTGCGGATTTCCATTACAGAAAAACTGGTGCCTGCATACCGTTCCTTTGTGGGAAGATATAGGAGTCACTTGGATAGTGAAAGGCATGCAGAGAAGT

Fln Alignment:

GG46A6U02J3GHJ___LKDAGLYRKGGFSGGVSKGALKERFKRFNAAFEDIYRTQKIWTVPDWQLREELRISITEKLVPAYRSFVGRYRSHLDSERHAEK
B8LQZ8_______________LRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEELQKTQSTWIVADDQLQTELRISVAEMVIPAYRQFLGRFQYYLENDRHPER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain