SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72294

Length: 163 nt

UniGene Fasta

>sp_v3.0_unigene72294
TTATTTTCTTGTCTTAGTACTCAACTAGTTCATAACTCATCTTATTATCCTCAATCTTACAGGAAAATTGAGATAGTGAAAAAATGTTTGGAATGATATCTTCGTTGCTTTGTAACTGATAGAAAAACACAATGGGTCAAGTGGTTACATCTAGTAGAATGGG

Ace file of the UniGene sp_v3.0_unigene72294

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI	-	-	9.0e-16	73%
FL-Next	tr=OSJNBa0065J03.2 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	51%
Sma3	Pol protein integrase region	-	-	0.0	-

Source	Gene names
Sma3	pol;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3	DNA integration	GO:0015074	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Integrase, catalytic core	IPR001584	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q7X7Y2

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 54 - 1629

Fln protein: LFSCLSTQLVHNSSYYPQSYRKIEIVKKCLE*YLRCFVTDRKTQWVKWLHLVEW

Protein Length: 55

Fln nts: TTATTTTCTTGTCTTAGTACTCAACTAGTTCATAACTCATCTTATTATCCTCAATCTTACAGGAAAATTGAGATAGTGAAAAAATGTTTGGAATGATATCTTCGTTGCTTTGTAACTGATAGAAAAACACAATGGGTCAAGTGGTTACATCTAGTAGAATGGG

Fln Alignment:

GG46A6U02GLTQ3___LFSCLSTQLVHNSSYYPQSYRKIEIVKKCLE*YLRCFVTDRKTQWVKWLHLVEW
Q7X7Y2_______________LFSASGTKLNLSTSYHPQSDRQTERVNQCLEIYLRCFAHANPSKWVTWLHLAEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain