SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72282

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene72282
CGTCGTGACCTTGGCTGTCACTCAACTTTTGCATGCACATGATACGCTTCATGGTGTTGATGACAATATTGGAAAGAGCAGGAAACTCTTGACATCAATGGTGAGGAGAATGAACCGAAACAAATGGATTATTGGTGGGCTTATCGGTGTTCTCGTCGTTGCTATT

Ace file of the UniGene sp_v3.0_unigene72282

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vesicle transport V-snare protein vti1a, putative n=1 Tax=Ricinus communis RepID=B9SVJ2_RICCO	-	-	9.0e-15	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Vesicle transport V-snare protein vti1a, putative	-	-	7.691e-13	-

Source	Gene names
Sma3	At1g26670; At1g26670/T24P13_20; At3g29100; At5g39510; B1064G04.46; GSVIVT00005946001; GSVIVT00016295001; GSVIVT00021013001; MUL8_190; MXE2.7; MtrDRAFT_AC155888g15v2; Os01g0560200; Os01g0707300; OsI_02435; OsI_03452; OsJ_02237; OsJ_02238; OsJ_03196; P0510F

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	late endosome membrane	GO:0031902	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	soluble NSF attachment protein activity	GO:0005483	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G29100.1	VTI13, ATVTI13 vesicle transport V-snare 13 chr3:11075916-11076581 REVERSE LENGTH=195	2.0e-19	74%
RefSeq	Arabidopsis thaliana	NP_001189997.1	vesicle transport V-snare 13 [Arabidopsis thaliana]	2.0e-19	74%
RefSeq	Populus trichocarpa	XP_002324075.1	predicted protein [Populus trichocarpa]	6.0e-19	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LND1

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 55 - 222

Fln protein: VVTLAVTQLLHAHDTLHGVDDNIGKSRKLLTSMVRRMNRNKWIIGGLIGVLVVAI

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTGCATGCACATGATACGCTTCATGGTGTTGATGACAATATTGGAAAGAGCAGGAAACTCTTGACATCAATGGTGAGGAGAATGAACCGAAACAAATGGATTATTGGTGGGCTTATCGGTGTTCTCGTCGTTGCTATT

Fln Alignment:

GG46A6U02HCRET___LLHAHDTLHGVDDNIGKSRKLLTSMVRRMNRNKWIIGGLIGVLVVAI
B8LND1_______________LLHAHDTLHGVDDNIGKSRKILTSMTRRMSRNKYIIGGLIGVLVVVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain