SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72276

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene72276
CGTCGTGACCTTGGCTGTCACTCATTCTAGTCACAGCTTTACATGTGAAAGGGACGGTGTCAAACATAAAATGTCCTTGGTATTATTGAAGTTCAGGATCTTCTTGTTGCAGGAGGTGCTTTGGCTCCTAGAACGGCTCATGAATTGATAGCAAACTTAGCTTGTCGTCTTGCAAGATGGGATGATAGGTTGTTCCGTAAGTATATTTTTGGGGAAGCAGATGAGGTGGAG

Ace file of the UniGene sp_v3.0_unigene72276

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=At2g42950; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%

Source	Gene names
Sma3	At1g29830; At2g42950; F1N18.13; F1N18.14; GSVIVT00003397001; Os01g0601000; Os01g0664100; OsI_02718; OsI_03162; OsJ_02494; OsJ_02916; P0003E08.7; P0518F01.18; PHYPADRAFT_119605; PHYPADRAFT_184902; POPTRDRAFT_811946; RCOM_0634270;

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42950.1	Magnesium transporter CorA-like family protein chr2:17864059-17866407 FORWARD LENGTH=501	3.0e-24	75%
RefSeq	Arabidopsis thaliana	NP_181823.2	Magnesium transporter CorA-like family protein [Arabidopsis thaliana]	4.0e-24	75%
RefSeq	Populus trichocarpa	XP_002331866.1	predicted protein [Populus trichocarpa]	5.0e-20	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8GY73

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 227 aas, your sequence is shorter than subject: 77 - 501

Fln protein: RRDLGCHSF*SQLYM*KGRCQT*NVLGIIEVQDLLVAGGALAPRTAHELIANLACRLARWDDRLFRKYIFGEADEVE

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAGTCACAGCTTTACATGTGAAAGGGACGGTGTCAAACATAAAATGTCCTTGGTATTATTGAAGTTCAGGATCTTCTTGTTGCAGGAGGTGCTTTGGCTCCTAGAACGGCTCATGAATTGATAGCAAACTTAGCTTGTCGTCTTGCAAGATGGGATGATAGGTTGTTCCGTAAGTATATTTTTGGGGAAGCAGATGAGGTGGAG

Fln Alignment:

GG46A6U02JJWZN___KGRCQT*NVLGIIEVQDLLVAGGALAPRTAHELIANLACRLARWDDRLFRKYIFGEADEVE
Q8GY73_______________KGFALNISVLGITEVQEMLIAGGACIPRTVHELIAHLACRLARWDDRLFRKYIFGAADEVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain