SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72258

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene72258
CGTCGTGACCTTGGCTGTCACTCATTGTGTGGCTCGCCTTCATTACGGCTGTGCCTGATGTTCTCTAAAGTTGGCAGTAGACTCTGGAGACGCTTACTGGGGCTCTATTTCAGCGTCCGCCTCTCATTTCGGCCGTCAAGAGGCAGCTACGTATAAGGACCATTTATGAGAGTAAGCTTCCTTGAGGTATGATGTTGAAAAGCATTTAG

Ace file of the UniGene sp_v3.0_unigene72258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	centromere/microtubule binding protein cbf5 [Cryptococcus neoformans var. neoformans JEC21] ref\|XP_775935.1\| hypothetical protein CNBD3420 [Cryptococcus neoformans var. neoformans B-3501A] gb\|EAL21288.1\| hypothetical protein CNBD3420 [Cryptococcus neoform	-	-	4.0e-09	96%
FL-Next	sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%

Source	Gene names
Sma3	At3g57150; CBF5; CHLREDRAFT_99415; Cbf5; GSVIVT00021307001; LOC_Os03g25450; MICPUCDRAFT_34321; MICPUN_107404; NAP57; OJ1136_D11.103; OSJNBa0013M12.22; OSTLU_30197; Os03g0370500; Os04g0576300; Os07g0636000; OsI_11747; OsI_11751; OsI_17062; OsI_27012; OsJ_1

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Pseudouridine synthase II	IPR002501	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-
Sma3	Pseudouridine synthase-related	IPR004802	-	-
Sma3	Dyskerin-like	IPR012960	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57150.1	NAP57, AtNAP57, CBF5, AtCBF5 homologue of NAP57 chr3:21154255-21155952 REVERSE LENGTH=565	7.0e-13	77%
RefSeq	Arabidopsis thaliana	NP_191274.1	H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]	9.0e-13	77%
RefSeq	Populus trichocarpa	XP_002323264.1	predicted protein, partial [Populus trichocarpa]	9.0e-13	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LD90

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 360 aas, your sequence is shorter than subject: 61 - 565

Fln protein: S*PWLSLIVWLAFITAVPDVL*SWQ*TLETLTGALFQRPPLISAVKRQLRIRTIYESKLP*

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTGTGGCTCGCCTTCATTACGGCTGTGCCTGATGTTCTCTAAAGTTGGCAGTAGACTCTGGAGACGCTTACTGGGGCTCTATTTCAGCGTCCGCCTCTCATTTCGGCCGTCAAGAGGCAGCTACGTATAAGGACCATTTATGAGAGTAAGCTTCCTTGAGGTATGATGTTGAAAAGCATTTAG

Fln Alignment:

GG46A6U02GX69R___TAVPDVL*SWQ*TLETLTGALFQRPPLISAVKRQLRIRTIYESKL
Q9LD90_______________SAVPDVAKVAR-ALESLTGAVFQRPPLISAVKRQLRIRTIYESKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain