SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72232

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene72232
CGTCGTGACCTTGGCTGTCACTCAATGTTGGTATTATGATGCAGCCACAGTGGCAAGACAAGAATTCTTTCATGCAGCATGGTTTGTGGAAGGGATTGTTATGCATATTCTTGTCATCCACATGATCAGAACAGAGAAAATTCTTTTCATTCAACGAAATGCATCATGGCCAGTAATATGTGTGACTGCTGTCATCTGTGCAATAGGTATAACATTTCCATATACAGTGA

Ace file of the UniGene sp_v3.0_unigene72232

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	magnesium-transporting ATPase MgtA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gb\|ABR80005.1\| Mg2+ transport ATPase, P-type 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]	-	-	3.0e-12	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00011448001; GSVIVT00011999001; POPTRDRAFT_818433; VITISV_016764;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	magnesium-importing ATPase activity	GO:0015444	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	magnesium ion transport	GO:0015693	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, magnesium-translocating	IPR006415	-	-
Sma3	Protein of unknown function DUF617, plant	IPR006460	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306511.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	7.0e-20	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B2F3

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 76 - 1258

Fln protein: VVTLAVTQCWYYDAATVARQEFFHAAWFVEGIVMHILVIHMIRTEKILFIQRNASWPVICVTAVICAIGITFPYTV

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTGGTATTATGATGCAGCCACAGTGGCAAGACAAGAATTCTTTCATGCAGCATGGTTTGTGGAAGGGATTGTTATGCATATTCTTGTCATCCACATGATCAGAACAGAGAAAATTCTTTTCATTCAACGAAATGCATCATGGCCAGTAATATGTGTGACTGCTGTCATCTGTGCAATAGGTATAACATTTCCATATACAGTGA

Fln Alignment:

GG46A6U02GDDK9___WYYDAATVARQEFFHAAWFVEGIVMHILVIHMIRTEKILFIQRNASWPVICVTAVICAIGITFPYT
A5B2F3_______________FYYRAYTANDARFFHSAWFTEGLLMQTLIIHLIRTEKIPFIQEVASWPVICSTVIVSAIGIAIPFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain