SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72224

Length: 316 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene72224
GTAGAGTATATGGCAGCGAGTTTAGCTAGTTGTGAGGCCATCTGGCTTCGCAAGATGTTTGGCTTATTTGGTCAACTGTTGAGACCTTCAGTGATTCACTGTGATAATCAGAGTTGCATTAAACTCATGGAGAATCCAGTATTTCATGACAGGTCAAAGCATATCGGGATCAAATATCATTTCATCAAAGACTATGTTCAAAAGGGATCTGTGAAGCTTGAGTATATTCCCACTGATTAGCAGGTTGCAGATATTCTTACCGAAGCCTTACCACGAGGCAAGCATGTCTACTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene72224 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB	-	-	7.0e-31	70%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	39%

Source	Gene names
Sma3	CCHC; F11I4_21; T15M6.14; T18I24.5;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 27 aas, your sequence is shorter than subject: 80 - 1328

Fln protein: VEYMAASLASCEAIWLRKMFGLFGQLLRPSVIHCDNQSCIKLMENPVFHDRSKHIGIKYHFIKDYVQKGSVKLEYIPTD*

Protein Length: 81

Fln nts: GTAGAGTATATGGCAGCGAGTTTAGCTAGTTGTGAGGCCATCTGGCTTCGCAAGATGTTTGGCTTATTTGGTCAACTGTTGAGACCTTCAGTGATTCACTGTGATAATCAGAGTTGCATTAAACTCATGGAGAATCCAGTATTTCATGACAGGTCAAAGCATATCGGGATCAAATATCATTTCATCAAAGACTATGTTCAAAAGGGATCTGTGAAGCTTGAGTATATTCCCACTGATTAG___CAGGTTGCAGATATTCTTACCGAAGCCTTACCACGAGGCAAGCATGTCTACTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U02FH3BN___EYMAASLASCEAIWLRKMFGLFGQLLRPSVIHCDNQSCIKLMENPVFHDRSKHIGIKYHFIKDYVQKGSVKLEYIPTD*QVADILTEALPRGK
P10978_______________EYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain