SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72215

Length: 297 nt

UniGene Fasta

>sp_v3.0_unigene72215
CGTCGTGACCTTGGCTGTCACTCAGCGGCTTACACGAGAAATTCAGGCAGTCGTTCCTGGTAGTAATTGAAGGAGGATTAGGAGATTTATATTTAGACATTCAGGTGGTATCACACATATAGTAGAGATCCTTTGAGGGATGGCCAAGATGAGGATGGAGATCACTGAGATGATTTAGGAGGTTTTGCTTCTCTTCATCATGGAGGAACAGTTTATATTAAGAGTGCCTCCATCTGTAGCTGAGAAAATAGAGCGAGTATTGAGTGAAAATCCAATTTCTTCAGATAGAAAACTCCA

Ace file of the UniGene sp_v3.0_unigene72215

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9	-	-	0.0001	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIID complex	GO:0005669	Cellular Component	-
Sma3	general RNA polymerase II transcription factor activity	GO:0016251	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TAFII55 protein, conserved region	IPR006751	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQY4

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 32 - 91

Fln protein: MEEQFILRVPPSVAEKIERVLSENPISSDRKL

Protein Length: 33

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGCTTACACGAGAAATTCAGGCAGTCGTTCCTGGTAGTAATTGAAGGAGGATTAGGAGATTTATATTTAGACATTCAGGTGGTATCACACATATAGTAGAGATCCTTTGAGGGATGGCCAAGATGAGGATGGAGATCACTGAGATGATTTAGGAGGTTTTGCTTCTCTTCATC_-_ATGGAGGAACAGTTTATATTAAGAGTGCCTCCATCTGTAGCTGAGAAAATAGAGCGAGTATTGAGTGAAAATCCAATTTCTTCAGATAGAAAACTCCA

Fln Alignment:

GG46A6U02G0CRQ___MEEQFILRVPPSVAEKIERVLSENPISSD
A9NQY4_______________MEEQFILRVPPSIAERIDQVLSENPTSSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain