SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72161

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene72161
CGTCGTGACCTTGGCTGTCACTCACTACTAGGGGTGTGGTGGAGGGGGCATGGTATTTTGAGATCAAGGTTGTTTACCTCTGTTAAAGTGGGCATACCAGATTTGGATGGTCTACAGAGAAAGGAGAGGTTGACCCTTATGAGATTGGTCCTGCAAGTAGAAATGGCTCAATTTATGCGGATATGAGATTGACTACCATTCATGAGTTTGTCCGTGGGTTGTTGTGAAGGTAACACAGAGAG

Ace file of the UniGene sp_v3.0_unigene72161

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAUCO n=1 Tax=Pinus radiata RepID=B3V288_PINRA	-	-	6.0e-11	66%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	66%
Sma3	TRAUCO	-	-	1.949e-06	-

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51450.1	TRO TRAUCO chr1:19074399-19076220 FORWARD LENGTH=509	5.0e-12	49%
RefSeq	Arabidopsis thaliana	NP_175556.1	TRAUCO protein [Arabidopsis thaliana]	7.0e-12	49%
RefSeq	Populus trichocarpa	XP_002299899.1	predicted protein [Populus trichocarpa]	1.0e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 135 aas, your sequence is shorter than subject: 75 - 412

Fln protein: S*PWLSLTTRGVVEGAWYFEIKVVYLC*SGHTRFGWSTEKGEVDPYEIGPASRNGSIYADMRLTTIHEFVRGLL*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTACTAGGGGTGTGGTGGAGGGGGCATGGTATTTTGAGATCAAGGTTGTTTACCTCTGTTAAAGTGGGCATACCAGATTTGGATGGTCTACAGAGAAAGGAGAGGTTGACCCTTATGAGATTGGTCCTGCAAGTAGAAATGGCTCAATTTATGCGGATATGAGATTGACTACCATTCATGAGTTTGTCCGTGGGTTGTTGTGAAGGTAACACAGAGAG

Fln Alignment:

GG46A6U02JNJYS___TRGVVEGAWYFEIKVVYLC*SGHTRFGWSTEKGEVDPYEIGPASRNGSIYA
B3V288_______________TRGVVEGAWYFEINVVYLGKTGHTRLGWSTEKGDVD----APVGYDGNSYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain