SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72155

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene72155
CGTCGTGACCTTGGCTGTCACTCAGCTTTCAAGTTTCCCGAGTACTGCTGCACTGGCGACCATAACACCGCTGACACGTGTCCTCCTACCAAGTACTCGAAGGTTTTCAAGGCCGCCTGCCCGACGGCGTACAGCTACGCTTACGACGTACGCCAGCAGCACTTTCACCTGCAGTGATGCTAGTTATACAATCACCTTCTGCGGGCAAAATTAGATCGTATCAACTTCTGTTTTTCTGAG

Ace file of the UniGene sp_v3.0_unigene72155

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Cryptomeria japonica RepID=Q5DWG1_CRYJA	-	-	1.0e-14	73%
FL-Next	tr=Thaumatin-like protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	73%
Sma3	Thaumatin-like protein	-	-	4.98e-11	-

Source	Gene names
Sma3	At1g19320; At1g75030; At2g24810; CETLP; Cry j 3.5; F9E10.12; GSVIVT00008848001; GSVIVT00014680001; LOC_Os03g13070; OJ1175C11.11; Os03g0233200; OsI_10647; OsJ_10041; PHYPADRAFT_154130; PHYPADRAFT_234028; PHYPADRAFT_79687; POPTRDRAFT_1101016; POPTRDRAFT_111

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24810.1	Pathogenesis-related thaumatin superfamily protein chr2:10573862-10574699 FORWARD LENGTH=193	3.0e-18	65%
RefSeq	Arabidopsis thaliana	NP_180054.1	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	4.0e-18	65%
RefSeq	Populus trichocarpa	XP_002330968.1	predicted protein [Populus trichocarpa]	1.0e-19	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5DWG1

Fln msg: your sequence is shorter than subject: 59 - 240

Fln protein: RRDLGCHSAFKFPEYCCTGDHNTADTCPPTKYSKVFKAACPTAYSYAYDVRQQHFHLQ*

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTCAAGTTTCCCGAGTACTGCTGCACTGGCGACCATAACACCGCTGACACGTGTCCTCCTACCAAGTACTCGAAGGTTTTCAAGGCCGCCTGCCCGACGGCGTACAGCTACGCTTACGACGTACGCCAGCAGCACTTTCACCTGCAGTGA___TGCTAGTTATACAATCACCTTCTGCGGGCAAAATTAGATCGTATCAACTTCTGTTTTTCTGAG

Fln Alignment:

GG46A6U02FXKOP___SAFKFPEYCCTGDHNTADTCPPTKYSKVFKAACPTAYSYAYD
Q5DWG1_______________AAFSTPEYCCTGDHGSPQTCSPSKYSQVFKSACPTAYSYAYD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain