SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72146

Length: 150 nt

UniGene Fasta

>sp_v3.0_unigene72146
CGTCGTGACCTTGGCTGTCACTCAGTTTCCATATGCTGAAATTTTCAAATGGCTCTCATATGGACATGATGGCAAGCATCCAGCTTGTGATTCATCTTACTTTGGTCGGAAGGAGTTCTCCTTCACATTAGAGCATGACATATATATTCG

Ace file of the UniGene sp_v3.0_unigene72146

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA primase n=1 Tax=Ricinus communis RepID=B9RQ40_RICCO	-	-	4.0e-14	78%
FL-Next	tr=Uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus).	-	-	0.0	75%
Sma3	DNA primase	-	-	1.509e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	6.647e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520	6.647e-12	%
Sma3	Lipopolysaccharide biosynthesis	00540	6.647e-12	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053	6.647e-12	%
Sma3	Metabolic pathways	01100	6.647e-12	%

Source	Gene names
Sma3	GSVIVT00002439001; OsI_19620; OsJ_18216; RCOM_0953600;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA primase activity	GO:0003896	Molecular Function	0.0	-
Sma3	DNA replication, synthesis of RNA primer	GO:0006269	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA primase, small subunit	IPR002755	-	0.0	-
Sma3	DNA primase, small subunit, eukaryotic/archaeal	IPR014052	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41880.1	" POLA3, POLA4 DNA primases;DNA primases chr5:16761071-16764074 FORWARD LENGTH=451"	3.0e-19	75%
RefSeq	Arabidopsis thaliana	NP_199003.5	DNA primase small subunit [Arabidopsis thaliana]	4.0e-19	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I3SCY1

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 49 - 347

Fln protein: VVTLAVTQFPYAEIFKWLSYGHDGKHPACDSSYFGRKEFSFTLEHDIYI

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCCATATGCTGAAATTTTCAAATGGCTCTCATATGGACATGATGGCAAGCATCCAGCTTGTGATTCATCTTACTTTGGTCGGAAGGAGTTCTCCTTCACATTAGAGCATGACATATATATTCG

Fln Alignment:

GG46A6U02HGLED___FPYAEIFKWLSYGHDGKHPACDSSYFGRKEFSFTLEHDIYI
I3SCY1_______________FPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDIYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain