SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72145

Length: 291 nt

UniGene Fasta

>sp_v3.0_unigene72145
CGTCGTGACCTTGGCTGTCACTCAATCATTGCTTTCTGTCGTGAACGCCTGCCGCAGTTTATGGCTCCTCGAACTGTTATATTTGGAGAGTTACCGAAAACTGCAACAGGAAAAGTTCAAAAAAATGTGCTAAGAGAGAAAGCAAAAGCATTAGGCAGCACGTCCGGCAGACATCAGAGCAAACTCTGAATGGCTCTTGACAGAGAAATCTATTGAGGTATGACTTACCTGTGGTTTAGTGATTCTGGTCAAATTCCCCTCCAGCTCCTGTAGTTCCCTTCAAAACTCTGT

Ace file of the UniGene sp_v3.0_unigene72145

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to adenosine monophosphate binding protein 1 AMPBP1 n=1 Tax=Vitis vinifera RepID=UPI0001985120	-	-	9.0e-13	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	AMP dependent ligase, putative	-	-	6.269e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	1.832e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.832e-10	%
Sma3	Metabolic pathways	01100	1.832e-10	%
Sma3	Biosynthesis of secondary metabolites	01110	1.832e-10	%

Source	Gene names
Sma3	ACLL7; AMPBP1; At1g20560; B1045F02.21; GSVIVT00002871001; GSVIVT00005114001; GSVIVT00005165001; GSVIVT00011592001; LOC_Os03g04120; LOC_Os03g04130; OJ1006F06.17; OJ1006F06.18; Os01g0342900; Os03g0133500; Os03g0133600; OsI_01787; OsI_09874; OsI_09875; OsJ_3

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20560.1	AAE1 acyl activating enzyme 1 chr1:7119927-7121730 REVERSE LENGTH=556	5.0e-16	62%
RefSeq	Arabidopsis thaliana	NP_001077568.1	acyl activating enzyme 1 [Arabidopsis thaliana]	5.0e-16	62%
RefSeq	Populus trichocarpa	XP_002307787.1	predicted protein [Populus trichocarpa]	1.0e-16	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: your sequence is shorter than subject: 63 - 569

Fln protein: RRDLGCHSIIAFCRERLPQFMAPRTVIFGELPKTATGKVQKNVLREKAKALGSTSGRHQSKL*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATTGCTTTCTGTCGTGAACGCCTGCCGCAGTTTATGGCTCCTCGAACTGTTATATTTGGAGAGTTACCGAAAACTGCAACAGGAAAAGTTCAAAAAAATGTGCTAAGAGAGAAAGCAAAAGCATTAGGCAGCACGTCCGGCAGACATCAGAGCAAACTCTGA___ATGGCTCTTGACAGAGAAATCTATTGAGGTATGACTTACCTGTGGTTTAGTGATTCTGGTCAAATTCCCCTCCAGCTCCTGTAGTTCCCTTCAAAACTCTGT

Fln Alignment:

GG46A6U02IWZGP___IIAFCRERLPQFMAPRTVIFGELPKTATGKVQKNVLREKAKALGS
A9NWM6_______________IMNYCRARLPGYMVPRSVVFGPLPKTATGKVQKHILRSKAKQMGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain