SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72100

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene72100
CGTCGTGACCTTGGCTGTCACTCACAATTTGCCATCCCCAACCTCCAATGTAACAGGGCTTATCAGTGTTTTGGGTTCCCAAAGGCTTGAATTTCACAGATCTGGTGGCCCTCTCAGGAGGACATACAATTGGCAGAAGCAACTGCTCCTCCTTCGACAACAGACTATATAACAGCACCACTGGTACACAAATGCGGGATCCTACCAGTACCACCGTT

Ace file of the UniGene sp_v3.0_unigene72100

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase n=2 Tax=Picea RepID=Q5W5I2_PICAB	-	-	2.0e-18	86%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	78%

Source	Gene names
Sma3	POPTRDRAFT_568220; POPTRDRAFT_743906; RCOM_0905920; px3;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002329191.1	predicted protein [Populus trichocarpa]	5.0e-11	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5W5I2

Fln msg: Overlapping hits, possible frame ERROR between 94 and 78, Distance to subject end: 121 aas, your sequence is shorter than subject: 73 - 351

Fln protein: VVTLAVTHNLPSPTSNVTGLISVLGxxxxxxxTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTSTTV

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCACAATTTGCCATCCCCAACCTCCAATGTAACAGGGCTTATCAGTGTTTTGGGTxxxxxxxxxxxxxxxxxxxxxACAGATCTGGTGGCCCTCTCAGGAGGACATACAATTGGCAGAAGCAACTGCTCCTCCTTCGACAACAGACTATATAACAGCACCACTGGTACACAAATGCGGGATCCTACCAGTACCACCGTT

Fln Alignment:

GG46A6U02ITFZ2___NLPSPTSNVTGLISVLGxxxxxxTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPT
Q5W5I2_______________NLPSPTSNVTVLISVLGxxxxxxTDLVALSGGHTIGRSNCSSFQNRLYNSTTGISMQDST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain