SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72072

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene72072
CGTCGTGACCTTGGCTGTCACTCAGGACATCCTCTACACACAAACTTACGACTGCGATGGATGGCTCGGCATTCTACCCGGAGTTTCTGCCACAATTGCCGCCGGGCTTCAGATTTCACCCCACAGACGAGGAGCTGCTCATCCATTACCTGAAGAACAAGGTCTCCTGTTCTCCTCTCCCTGCTTCAATTATTGCAGAGATTGACGTGTACAAGCATGACCCCTGGGATTTGCCCGCGAAGGCTTCTTTGGAGAGCAAGAGTGGTA

Ace file of the UniGene sp_v3.0_unigene72072

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain containing protein 2 [Arabidopsis thaliana] gb\|AAF35417.1\| putative jasmonic acid regulatory protein [Arabidopsis thaliana] dbj\|BAB20600.1\| AtNAC2 [Arabidopsis thaliana] dbj\|BAB02380.1\| jasmonic acid regulatory protein-like [Arabidopsis thalian	-	-	7.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	NAC domain protein, IPR003441	-	-	3.39114e-43	-

Source	Gene names
Sma3	ATAF; ATAF1; At1g01720; At1g52880; At1g61110; At1g61110/F11P17_16; At1g65910; At1g69490; At1g77450; At1g77450/T5M16_4; At2g33480; At3g04070; At3g15510; At3g29035; At5g13180; At5g39610; AtNAC2; B1065E10.51; B1148D12.1; CyNAC1; F10D13.14; F11P17.16; F12P19.

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15510.1	ATNAC2, ANAC056, NARS1, NAC2 NAC domain containing protein 2 chr3:5243696-5245037 FORWARD LENGTH=364	8.0e-25	66%
RefSeq	Arabidopsis thaliana	NP_188170.1	NAC domain containing protein 2 [Arabidopsis thaliana]	1.0e-24	66%
RefSeq	Populus trichocarpa	XP_002326347.1	NAC domain protein, IPR003441 [Populus trichocarpa]	6.0e-25	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABS0

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 70 - 270

Fln protein: MDGSAFYPEFLPQLPPGFRFHPTDEELLIHYLKNKVSCSPLPASIIAEIDVYKHDPWDLPAKASLESKSG

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGACATCCTCTACACACAAACTTACGACTGCG_-_ATGGATGGCTCGGCATTCTACCCGGAGTTTCTGCCACAATTGCCGCCGGGCTTCAGATTTCACCCCACAGACGAGGAGCTGCTCATCCATTACCTGAAGAACAAGGTCTCCTGTTCTCCTCTCCCTGCTTCAATTATTGCAGAGATTGACGTGTACAAGCATGACCCCTGGGATTTGCCCGCGAAGGCTTCTTTGGAGAGCAAGAGTGGTA

Fln Alignment:

GG46A6U02HYKVB___MDGSAFYPEFLPQLPPGFRFHPTDEELLIHYLKNKVSCSPLPASIIAEIDVYKHDPWDLPAKASLESK
D5ABS0_______________MEGLAFHQQVLLQLPVGFRFEPTDEELLIYYLKKKVSSSPFPGSVIAEIDLYKHDPWDLPAKAFFGEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain