SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71920

Length: 310 nt

UniGene Fasta

>sp_v3.0_unigene71920
CGTCGTGACCTTGGCTGTCACTCTTTTCTGGTATTGAGCTGGCTATGGCTTGTAGGGACATGAATTCTAAGCTGGACTCATTTGTCATGCTCATGTGTACTGCTGTTTCGCTTACAGGATCCAGTGCTGCCCTGGGATTTGGTTTCGGTATTGTTCTGTATGTGATTCTCAGATTCAGAGACAAGGGCTTTTCGGATTGCATAAACATATTCAAAGCATTGTTGAACAGAAGAAAACTCTCGGACGAGACCTAAACAGAAAGTCCATGGATACAAGGGAATCTGCTTCTGATTCATATCCATTGCCCCTT

Ace file of the UniGene sp_v3.0_unigene71920

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sulfate transporter like protein n=4 Tax=Brassicaceae RepID=Q0WP36_ARATH	-	-	3.0e-15	57%
FL-Next	Isoform 2 of Molybdate transporter 2 OS=Arabidopsis thaliana GN=MOT2	-	-	0.0	57%
Sma3	Putative sulfate transporter	-	-	7.791e-15	-

Source	Gene names
Sma3	AT1G80310; At1g80310; At2g25680; GSVIVT00032545001; GSVIVT00034528001; Os01g0645900; OsI_03055; OsJ_02808; P0038D11.6; P0707D10.33; POPTRDRAFT_1081544; POPTRDRAFT_867757; RCOM_0804060; RCOM_0896860; Sultr5;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	molybdate ion transmembrane transporter activity	GO:0015098	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	molybdate ion transport	GO:0015689	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sulphate transporter	IPR011547	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80310.1	sulfate transmembrane transporters chr1:30194951-30196345 FORWARD LENGTH=464	5.0e-20	57%
RefSeq	Arabidopsis thaliana	NP_178147.1	sulfate transmembrane transporter [Arabidopsis thaliana]	7.0e-20	57%
RefSeq	Populus trichocarpa	XP_002308631.1	predicted protein [Populus trichocarpa]	8.0e-17	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0WP36-2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 84 - 377

Fln protein: S*PWLSLFSGIELAMACRDMNSKLDSFVMLMCTAVSLTGSSAALGFGFGIVLYVILRFRDKGFSDCINIFKALLNRRKLSDET*

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTTTCTGGTATTGAGCTGGCTATGGCTTGTAGGGACATGAATTCTAAGCTGGACTCATTTGTCATGCTCATGTGTACTGCTGTTTCGCTTACAGGATCCAGTGCTGCCCTGGGATTTGGTTTCGGTATTGTTCTGTATGTGATTCTCAGATTCAGAGACAAGGGCTTTTCGGATTGCATAAACATATTCAAAGCATTGTTGAACAGAAGAAAACTCTCGGACGAGACCTAA___ACAGAAAGTCCATGGATACAAGGGAATCTGCTTCTGATTCATATCCATTGCCCCTT

Fln Alignment:

GG46A6U02F527J___LSLFSGIELAMACRDMNSKLDSFVMLMCTAVSLTGSSAALGFGFGIVLYVILRFRDKGFSDCINIFKALLNRRKLSDET*TES
Q0WP36-2_____________LLLFAGIELAMASKDMNSKEDSFIMLVCAAVSMTGSSAALGFGCGVVLYLLLKLRT---LDCSSV--TLFSRS--SDESQVDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain