SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71915

Length: 160 nt

UniGene Fasta

>sp_v3.0_unigene71915
CGTCGTGACCTTGGCTGTCACTCATGTCCAGTTCCATTCAACTTTGACTTTGAGCAGCATGCATTGACAGAAGAACAGATGAGAGAGCTGATATACATGGAGGCTCTTGCATTCAATCCAGACTTAGAAGACTGAGTGGTGGTCTTTTTTCTGTTTCAGA

Ace file of the UniGene sp_v3.0_unigene71915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MAP kinase n=1 Tax=Papaver rhoeas RepID=Q683Y6_9MAGN	-	-	1.0e-08	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Mitogen-activated protein kinase 6	-	-	5.335e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase.	EC:2.7.11.24	-	2.983e-08	-

Source	Gene names
Sma3	At2g43790; ERK1; F18O19.10; GSVIVT00034702001; LOC_Os06g06090; MAPK6; MK2; MMK1; MPK1; MPK2; MPK6; MPK7; MSK7; NTF4; NbNTF4; NbSIPK; NtSIPK; OSJNBa0085L11.14; Os06g0154500; OsI_21727; OsJ_20171; POPTRDRAFT_718188; POPTRDRAFT_735966; RCOM_0723010; SIPK; St

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	camalexin biosynthetic process	GO:0010120	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43790.1	ATMPK6, MPK6, MAPK6, ATMAPK6 MAP kinase 6 chr2:18138477-18140693 FORWARD LENGTH=395	5.0e-13	74%
RefSeq	Arabidopsis thaliana	NP_181907.1	mitogen-activated protein kinase 6 [Arabidopsis thaliana]	6.0e-13	74%
RefSeq	Populus trichocarpa	XP_002310398.1	predicted protein [Populus trichocarpa]	4.0e-13	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ04

Fln msg: your sequence is shorter than subject: 45 - 277

Fln protein: RRDLGCHSCPVPFNFDFEQHALTEEQMRELIYMEALAFNPDLED*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCCAGTTCCATTCAACTTTGACTTTGAGCAGCATGCATTGACAGAAGAACAGATGAGAGAGCTGATATACATGGAGGCTCTTGCATTCAATCCAGACTTAGAAGACTGA___GTGGTGGTCTTTTTTCTGTTTCAGA

Fln Alignment:

GG46A6U02I2O8Q___SCPVPFNFDFEQHALTEEQMRELIYMEALAFNP
B8LQ04_______________TCPIPFNFEFEEHALTEEQMRELIYREALEFNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain