SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71899

Length: 368 nt

UniGene Fasta

>sp_v3.0_unigene71899
CGTCGTGACCTTGGCTGTCACTCATGTTGTAGTTCCATTCAGTTTGACTAATGCCCCAGCTACATTTATATTTTTGATGAATAGTGTGTTGCATCCGTATCTGGACAAGTTTTTTATTGTATTCATTGATGACATCTTGATATAATCTAAGAATGAAGAAGATCATGCAAATCATTTAGCATCAATGTTAAGATTACTGAGAGAACATCAATTGTACACCAAGCTTAGGAAGTGGAGCTTATTTCAGATAGAGTTGCACTACTTAGGATTTGTTGTTTCCAAGGAAGCAATGTTAGTAAAACCATAGAAGATAAGGGCCATCATGGAGTGGGAAACTACCTAAGAATGTGGATGAGGTGAGATCATTC

Ace file of the UniGene sp_v3.0_unigene71899

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA	-	-	2.0e-15	43%
FL-Next	tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet).	-	-	0.0	54%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	4.166e-30	-

Source	Gene names
Sma3	AT4g03650; AT4g10580; At2g04670; At2g07660; At2g10780; At2g14650; B1159F04.11; F9D12.11; H0207B04.5; H0502G05.10; H0512B01.1; H0613A10.2; H0624F09.1; H0807C06-H0308C08.9; H0813E03.8; H0818H01.18; LOC_Os03g15160; LOC_Os03g15450; LOC_Os03g23110; LOC_Os03g23

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G9FIF2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 728 aas, your sequence is shorter than subject: 102 - 1553

Fln protein: VVTLAVTHVVVPFSLTNAPATFIFLMNSVLHPYLDKFFIVFIDDILI*SKNEEDHANHLASMLRLLREHQLYTKLRKWSLFQIELHYLGFVVSKEAMLVKP*

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGTAGTTCCATTCAGTTTGACTAATGCCCCAGCTACATTTATATTTTTGATGAATAGTGTGTTGCATCCGTATCTGGACAAGTTTTTTATTGTATTCATTGATGACATCTTGATATAATCTAAGAATGAAGAAGATCATGCAAATCATTTAGCATCAATGTTAAGATTACTGAGAGAACATCAATTGTACACCAAGCTTAGGAAGTGGAGCTTATTTCAGATAGAGTTGCACTACTTAGGATTTGTTGTTTCCAAGGAAGCAATGTTAGTAAAACCATAGAAGATAAGGGCCATCATGGAGTGGGAAACTACCTAAGAATGTGGATGAGGTGAGATCATTC

Fln Alignment:

GG46A6U02ITB3C___PFSLTNAPATFIFLMNSVLHPYLXXXXXXXXXXXLI*SKNEEDHANHLASMLRLLREHQLYTKLRKWSLFQIELHYLGFVVSKEAMLVKP*KIRAI
G9FIF2_______________PFGLTNAPAVFMDLMNRIFRPYLDKFVVVFIDDILIYSKNKEEHEDHLRVILQTLRDNQLYAKFSKCEFWLERVSFLGHFISKEGVLVDPAKIKAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain