SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71854

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene71854
CGTCGTGACCTTGGCTGTCACTCATTCTTGGAGTTGCAAGGGTTCTTCGCAAGAAGGTTTANTGGTGCAGCCAAACTTCGTTTGCTGGAATGCTTGGCTCCTAAGGAGGATATGCAGTGGTTAACATCCAATGAGCAAGAAAGTCATATTCATGTTGTGCCTTTGTGGACCATAGCAAGCTTCAAGAGGATGACTTTCATATCAAAACGTT

Ace file of the UniGene sp_v3.0_unigene71854

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] gb\|AAC28555.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAM14896.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAO64178.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04	-	-	5.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Sma3	Putative SNM1	-	-	7.797e-06	-

Source	Gene names
Sma3	GSVIVT00032307001; OJ1344_B01.7; Os09g0439000; OsI_31515; OsJ_29509; P0556H01.23;

Source	InterPros	Term	Type	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Sterile alpha motif/pointed domain	IPR013761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45700.1	sterile alpha motif (SAM) domain-containing protein chr2:18827216-18830505 REVERSE LENGTH=723	4.0e-15	53%
RefSeq	Arabidopsis thaliana	NP_182094.1	sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	6.0e-15	53%
RefSeq	Populus trichocarpa	XP_002309453.1	predicted protein [Populus trichocarpa]	7.0e-17	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7STZ6

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 70 - 723

Fln protein: RRDLGCHSFLELQGFFARRFNGAAKLRLLECLAPKEDMQWLTSNEQESHIHVVPLWTIASFKRMTFISKR

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTGGAGTTGCAAGGGTTCTTCGCAAGAAGGTTTAaTGGTGCAGCCAAACTTCGTTTGCTGGAATGCTTGGCTCCTAAGGAGGATATGCAGTGGTTAACATCCAATGAGCAAGAAAGTCATATTCATGTTGTGCCTTTGTGGACCATAGCAAGCTTCAAGAGGATGACTTTCATATCAAAACGTT

Fln Alignment:

GG46A6U02GBNJ9___FLELQGFFARR-FNGAAKLRLLECLA-PKEDMQWLTSNEQESHIHVVPLWTIASFKRMTFISKR
D7STZ6_______________FLEVARVLRKKVYVNAAKLHILECLEFQKEDMQWFTLNEQESHIHVVPMWTLASFKRLKHISNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain